Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_C05
         (1189 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    56   1e-08
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    39   0.001
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    30   0.72 
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    29   1.7  
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    27   3.9  
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch...    26   8.9  
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    26   8.9  

>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 55.6 bits (128), Expect = 1e-08
 Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
 Frame = +1

Query: 244 PSASRAARG---GLAVDXXSIPHRPPFIAHISNLPYXVEXSAIAXLFAD-LKVTNLSLPX 411
           P  SR   G   G   D   IP  PPF AH+ NL + +  + +   F + +    L +  
Sbjct: 68  PPESRREGGMGSGYQRDAIPIPSEPPFTAHVGNLSFDLTENDLGDFFGEGVTSIRLVIDP 127

Query: 412 XGDRLKGHGYVDFEXRENLIEALNMPDLTIGGRRVRIEVSTP 537
             +R +G GYV+FE  + L  AL +    + GR VRI V+ P
Sbjct: 128 LTERSRGFGYVEFETADTLSAALALSGEDLMGRPVRITVAEP 169


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 31/107 (28%), Positives = 45/107 (42%)
 Frame = +1

Query: 217 SHPRAPVVLPSASRAARGGLAVDXXSIPHRPPFIAHISNLPYXVEXSAIAXLFADLKVTN 396
           S+PR     P A +  R G   D  S P    F+ ++S      + S       D++   
Sbjct: 339 SNPRPANPQPYAQQ--RAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIR 396

Query: 397 LSLPXXGDRLKGHGYVDFEXRENLIEALNMPDLTIGGRRVRIEVSTP 537
           L       RLKG GYV F   ++  + + M    I GR  R++ STP
Sbjct: 397 LPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTP 443



 Score = 29.9 bits (64), Expect = 0.72
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 421 RLKGHGYVDFEXRENLIEALNMPDL-TIGGRRVRIEVSTP 537
           R KG+GYVDFE  E    A+       I GR V +++S P
Sbjct: 302 RSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNP 341


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 29.9 bits (64), Expect = 0.72
 Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +1

Query: 421 RLKGHGYVDFEXRENLIEA-LNMPDLTIGGRRVRIEVSTP 537
           R +G G+V +E  E+ +EA ++ P +TI G+ V ++ +TP
Sbjct: 286 RPRGFGFVTYE-NESAVEATMSQPYITIHGKPVEVKRATP 324


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 567 ASTSSHSTVIWSRHLNSY 514
           AS +S ST+ W  HLNSY
Sbjct: 250 ASFASQSTIAWQSHLNSY 267


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 548 EWDEVDALIEIGTMTLSVQWVTGAPDPALYPTRPAA 655
           ++ ++DA I++    LS+ W    P P L P   +A
Sbjct: 356 QFSDIDAWIQVACPRLSIDWGYAFPAPLLTPYEASA 391


>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
           Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 148

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 527 CLLQMTVEWDEVDALIEIGTMTLSVQWVTGAPDP 628
           CL  +  +W      ++I T+ LS+Q + GAP+P
Sbjct: 86  CLSTLKKDWSPA---LQIRTVLLSIQALMGAPNP 116


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +1

Query: 421 RLKGHGYVDFEXRENLIEALNMPDLTIGGRRVRIE 525
           R KG  YVDF   E +  ALN   L I    + IE
Sbjct: 348 RRKGTAYVDFVNHECVQLALNKKTLQINNATLNIE 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,246
Number of Sequences: 5004
Number of extensions: 40828
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 639490422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)