Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_C02
         (1272 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.021
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    34   0.047
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    33   0.064
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.45 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   3.2  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   7.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   9.7  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    26   9.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.1 bits (77), Expect = 0.021
 Identities = 15/27 (55%), Positives = 15/27 (55%)
 Frame = -2

Query: 977 GXPPPPXXKXXPPXPXXXXGPPPPPPP 897
           G PPPP     PP      GPPPPPPP
Sbjct: 759 GGPPPPP----PPPGVAGAGPPPPPPP 781



 Score = 34.7 bits (76), Expect = 0.028
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -2

Query: 971 PPPPXXKXXPPXPXXXXGPPPPPPPG 894
           P P      PP P     PPPPPPPG
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPG 769



 Score = 34.7 bits (76), Expect = 0.028
 Identities = 15/29 (51%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -3

Query: 643 PXGXPXPGGXXXPPPP-GXXXKXPPPPPP 560
           P   P  GG   PPPP G     PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -3

Query: 631 PXPGGXXXPPPPGXXXKXPPPPPP 560
           P P     PPP       PPPPPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -2

Query: 971 PPPPXXKXXPPXPXXXXGPPPPPPP 897
           P P       P P    G PPPPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPP 766



 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -2

Query: 632 PXPGGXXAPPPPRXGXKKXPPPXXP 558
           P  GG   PPPP       PPP  P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -3

Query: 979 GXXPPPPXXKXXXPXXXXXXXPPPPPP 899
           G  PPPP      P       PPPPPP
Sbjct: 759 GGPPPPP----PPPGVAGAGPPPPPPP 781


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 33.9 bits (74), Expect = 0.048
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = -2

Query: 977 GXPPPPXXKXXPPXPXXXXGPPPPPPPG 894
           G PPPP     PP       PPPPPPPG
Sbjct: 7   GNPPPPPP---PPGFEPPSQPPPPPPPG 31



 Score = 31.9 bits (69), Expect(2) = 0.047
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = -3

Query: 643 PXGXPXPGGXXXPPPPGXXXKXPPPPPP 560
           P G P P     PPPPG      PPPPP
Sbjct: 5   PPGNPPP----PPPPPGFEPPSQPPPPP 28



 Score = 20.6 bits (41), Expect(2) = 0.047
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -3

Query: 454 PPPPPXXKXKXXRGXXPPKT 395
           PPPPP    K  +   P ++
Sbjct: 25  PPPPPPGYVKKRKNKTPAQS 44


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 33.5 bits (73), Expect = 0.064
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -2

Query: 977  GXPPPPXXKXXPPXPXXXXGPPPPPPP 897
            G PP P     PP P    G PP PPP
Sbjct: 1187 GVPPVPPPSEAPPVPKPSVGVPPVPPP 1213



 Score = 29.5 bits (63), Expect = 1.0
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -2

Query: 977  GXPPPPXXKXXPPXPXXXXGPPPPPPP 897
            G PP P     PP P    G PP P P
Sbjct: 1206 GVPPVPPPSTAPPVPTPSAGLPPVPVP 1232



 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -2

Query: 971  PPPPXXKXXPPXPXXXXGPPPPPPP 897
            PP P     PP P    G P  PPP
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAPPP 1065



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -2

Query: 977  GXPPPPXXKXXPPXPXXXXGPPPPPPP 897
            G PP P     PP P      PP P P
Sbjct: 1081 GAPPVPAPSGIPPVPKPSVAAPPVPKP 1107



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -2

Query: 971  PPPPXXKXXPPXPXXXXGPPPPPPP 897
            P P      PP P    G PP PPP
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPP 1194



 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -2

Query: 971  PPPPXXKXXPPXPXXXXGPPPPPPP 897
            PP P     PP P      PP P P
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAP 1155



 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -2

Query: 971  PPPPXXKXXPPXPXXXXGPPPPPPP 897
            PP P     PP P      PP P P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAP 1174


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.7 bits (66), Expect = 0.45
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = -2

Query: 971  PPPPXXKXXPP--XPXXXXGPPPPPPP 897
            PPPP     PP   P    GPP  PPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -2

Query: 971  PPPPXXKXXPPXPXXXXGPPPPPPP 897
            PPPP     PP P      PPPP P
Sbjct: 1715 PPPPSA---PPMPAGPPSAPPPPLP 1736



 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -2

Query: 968  PPPXXKXXPPXPXXXXGPPPPPPP 897
            PP      PP P     PPP  PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPP 1722


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
 Frame = -2

Query: 971 PPPPXXKXXP--PXPXXXXGPPPPPPP 897
           PPPP        P P      PPPPPP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 27.5 bits (58), Expect = 4.2
 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 6/31 (19%)
 Frame = -2

Query: 971 PPPPXXKXXPPXPXXXXG------PPPPPPP 897
           PPPP  +     P    G      PPPPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 23.8 bits (49), Expect(2) = 9.1
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = -3

Query: 643 PXGXPXPGGXXXPPPPGXXXKXPPPPPP 560
           P   P        P P      PPPPPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 20.6 bits (41), Expect(2) = 9.1
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = -3

Query: 451 PPPPXXKXKXXRGXXPP 401
           PPPP  +     G  PP
Sbjct: 361 PPPPPPRSAPSTGRQPP 377


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +1

Query: 895 PGGGGGGGPXXXXGXGGXXFXXGGGGXP 978
           PGG GGG      G GG     GG G P
Sbjct: 244 PGGFGGGLGGFGGGPGGFGGGPGGHGGP 271



 Score = 26.2 bits (55), Expect = 9.7
 Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = +1

Query: 895 PGGGGGGGPXXXXGXGGXXFXXGG-GGXP 978
           PGG GGG      G GG     GG GG P
Sbjct: 237 PGGFGGGPGGFGGGLGGFGGGPGGFGGGP 265


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -2

Query: 968 PPPXXKXXPPXPXXXXGPPPPPPP 897
           PP         P     PPPPPPP
Sbjct: 173 PPSAAAPATSLPSDYNPPPPPPPP 196



 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -2

Query: 971 PPPPXXKXXPPXPXXXXGPPPPPPP 897
           PP    K   P P     PPPPPPP
Sbjct: 224 PPTYTPKQADPLP----APPPPPPP 244


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = -2

Query: 665 PXGEXXFXRRXPXPG-GXXAPPPPRXGXKKXPPP 567
           P G+       P  G G  APPPP    +  PPP
Sbjct: 109 PLGQAPVGLAGPVRGVGYTAPPPPAGFGRGAPPP 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,305,675
Number of Sequences: 5004
Number of extensions: 30494
Number of successful extensions: 430
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 691537944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)