Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_C02
         (1272 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   3.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   9.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -2

Query: 968 PPPXXKXXPPXPXXXXGPPPPPPPG 894
           P    +  PP P    GPPP  PPG
Sbjct: 31  PQAPQRGSPPNPSQ--GPPPGGPPG 53


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 917  PPPPPPP 897
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 3.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 917  PPPPPPP 897
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -3

Query: 622 GGXXXPPPPGXXXKXPPPPPP 560
           G    PP P      PPPPPP
Sbjct: 333 GDSDTPPKPA-----PPPPPP 348



 Score = 22.2 bits (45), Expect = 9.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 944 PPXPXXXXGPPPPPP 900
           PP P     PPPPPP
Sbjct: 338 PPKP----APPPPPP 348



 Score = 22.2 bits (45), Expect = 9.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 717 PPKXTPXPPP 688
           PPK  P PPP
Sbjct: 338 PPKPAPPPPP 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,868
Number of Sequences: 438
Number of extensions: 8936
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43582869
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)