Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_B24
         (1121 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y09953-1|CAA71084.1|   91|Anopheles gambiae histone H4 protein.       120   8e-29
CR954257-13|CAJ14164.1|  420|Anopheles gambiae predicted protein...    27   1.3  
AY428512-1|AAR89530.1|  420|Anopheles gambiae EKN1 protein.            27   1.3  

>Y09953-1|CAA71084.1|   91|Anopheles gambiae histone H4 protein.
          Length = 91

 Score =  120 bits (289), Expect = 8e-29
 Identities = 59/61 (96%), Positives = 59/61 (96%)
 Frame = +3

Query: 216 TKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYA 395
           TKPAIRRLARRGGVKRISGLIYEE RGVLKVFLENVIRDAV YTEHAKRKTVTAMDVVYA
Sbjct: 31  TKPAIRRLARRGGVKRISGLIYEERRGVLKVFLENVIRDAVAYTEHAKRKTVTAMDVVYA 90

Query: 396 L 398
           L
Sbjct: 91  L 91



 Score = 27.5 bits (58), Expect = 0.77
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +2

Query: 179 HRKVLRDNIQG 211
           HRKVLRDNIQG
Sbjct: 19  HRKVLRDNIQG 29


>CR954257-13|CAJ14164.1|  420|Anopheles gambiae predicted protein
           protein.
          Length = 420

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 325 ITFSRNTLRTPRVSSYIRPEIRFTPPLRAKRRIAGF 218
           +TFS  T  TP+  S  + E  +T    A RR  GF
Sbjct: 236 VTFSERTFVTPKRESMEQAEQEWTLKQAAARRAVGF 271


>AY428512-1|AAR89530.1|  420|Anopheles gambiae EKN1 protein.
          Length = 420

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 325 ITFSRNTLRTPRVSSYIRPEIRFTPPLRAKRRIAGF 218
           +TFS  T  TP+  S  + E  +T    A RR  GF
Sbjct: 236 VTFSERTFVTPKRESMEQAEQEWTLKQAAARRAVGF 271


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 724,493
Number of Sequences: 2352
Number of extensions: 11047
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 65
effective length of database: 411,099
effective search space used: 126618492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)