Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_B23
(1217 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.015
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.11
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 32 0.14
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.14
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.43
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 29 1.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.3
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.5 bits (78), Expect = 0.015
Identities = 19/44 (43%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Frame = -3
Query: 1023 PXXXXXPQKXPPPXXXXGGXFXPPPPXG--GGXPPXPXXXKPPP 898
P P PPP GG PPPP G G PP P PPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP--PPPPP 783
Score = 35.5 bits (78), Expect = 0.015
Identities = 16/31 (51%), Positives = 16/31 (51%)
Frame = -3
Query: 957 PPPPXGGGXPPXPXXXKPPPXGXXKXPPPPP 865
PP P GG PP P PPP PPPPP
Sbjct: 753 PPAPIMGGPPPPP----PPPGVAGAGPPPPP 779
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Frame = -3
Query: 957 PPPPXGGGXP---PXPXXXKPP-PXGXXKXPPPPPXG 859
PPPP P P P PP P PPPPP G
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769
Score = 27.9 bits (59), Expect = 3.0
Identities = 17/45 (37%), Positives = 17/45 (37%)
Frame = -3
Query: 999 KXPPPXXXXGGXFXPPPPXGGGXPPXPXXXKPPPXGXXKXPPPPP 865
K PPP P P PP P PPP PPPPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP------PPPPP 768
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.7 bits (71), Expect = 0.11
Identities = 17/45 (37%), Positives = 18/45 (40%)
Frame = -3
Query: 1005 PQKXPPPXXXXGGXFXPPPPXGGGXPPXPXXXKPPPXGXXKXPPP 871
P PPP G P PP G PP P P G + PPP
Sbjct: 337 PPPPPPPRSNAAGSI-PLPPQGRSAPPPPPPRSAPSTG--RQPPP 378
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -3
Query: 957 PPPPXGGGXPPXPXXXKPPPXGXXKXPPPPP 865
PPPP P PP G PPPPP
Sbjct: 340 PPPPRSNAAGSIPL----PPQGRSAPPPPPP 366
Score = 28.3 bits (60), Expect = 2.3
Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Frame = -3
Query: 990 PPXXXXGGXFXPP-PPXGGGXPPXPXXXKPPPXGXXKXPPPPP 865
PP G PP PP PP P P P PPP
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478
Score = 26.2 bits (55), Expect = 9.2
Identities = 13/43 (30%), Positives = 13/43 (30%)
Frame = -3
Query: 993 PPPXXXXGGXFXPPPPXGGGXPPXPXXXKPPPXGXXKXPPPPP 865
PPP PP P P P K P PPP
Sbjct: 253 PPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPP 295
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 32.3 bits (70), Expect = 0.14
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +2
Query: 866 GGGGGFFXXPXGGGXXXXGXGGXPPPXGGG 955
GG GGF P G G G GG P GGG
Sbjct: 235 GGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264
Score = 29.9 bits (64), Expect = 0.75
Identities = 18/44 (40%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Frame = +2
Query: 866 GGGGGFFXXPXGGGXXXXGXGGXPPPXGG--GGXKXPPXXXXGG 991
GG GGF P G G GG P GG GG P GG
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264
Score = 28.3 bits (60), Expect = 2.3
Identities = 28/98 (28%), Positives = 28/98 (28%)
Frame = +2
Query: 875 GGFFXXPXGGGXXXXGXGGXPPPXGGGGXKXPPXXXXGGGXFWGXXXXXGXPPGXKKXFF 1054
GG G G G GGG PP G G F G G G F
Sbjct: 169 GGLASHALGNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGGF-GGFGGEGHHHGGHGGFG 227
Query: 1055 XPXGXXPXGXXGXXXXXXFFXGGXXKXFXXGGGXXXGG 1168
G G G F GG F G G GG
Sbjct: 228 GGPGGFEGGPGGFGGGPGGFGGGLG-GFGGGPGGFGGG 264
Score = 27.5 bits (58), Expect = 4.0
Identities = 26/89 (29%), Positives = 27/89 (30%)
Frame = +2
Query: 899 GGGXXXXGXGGXPPPXGGGGXKXPPXXXXGGGXFWGXXXXXGXPPGXKKXFFXPXGXXPX 1078
GGG G G PP G GG G G G G PG + G P
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGF-GGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPG 245
Query: 1079 GXXGXXXXXXFFXGGXXKXFXXGGGXXXG 1165
G G GG F G G G
Sbjct: 246 GFGGGLGG----FGGGPGGFGGGPGGHGG 270
Score = 27.5 bits (58), Expect = 4.0
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +2
Query: 866 GGGGGFFXXPXGGGXXXXGXGGXPPPXGGGG 958
GG GGF G G G GG P GG G
Sbjct: 242 GGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
Score = 26.2 bits (55), Expect = 9.2
Identities = 24/77 (31%), Positives = 24/77 (31%), Gaps = 4/77 (5%)
Frame = +2
Query: 872 GGGFFXXPXGGGXXXXGXGGXP--PPXGGGGXKXPPXXXXGG--GXFWGXXXXXGXPPGX 1039
GGGF G G G GG GG G GG G F G G PG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246
Query: 1040 KKXFFXPXGXXPXGXXG 1090
G P G G
Sbjct: 247 FGGGLGGFGGGPGGFGG 263
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.14
Identities = 27/106 (25%), Positives = 28/106 (26%), Gaps = 6/106 (5%)
Frame = -3
Query: 1164 PXXXPPPXXKXFXXPPXKKXXXXXXPXX-PXGXXPXGXKXXFFXPGGXPXXXXX---PQK 997
P PP PP K P P G P P P P
Sbjct: 1107 PSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSV 1166
Query: 996 XPPPXXXXGGXFXPPPPXGGGXPPXPXXXKPPPXGXXK--XPPPPP 865
PP P P G PP P + PP PP PP
Sbjct: 1167 AAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212
Score = 30.3 bits (65), Expect = 0.57
Identities = 28/101 (27%), Positives = 29/101 (28%), Gaps = 2/101 (1%)
Frame = -3
Query: 1164 PXXXPPPXXKXFXXPPXKKXXXXXXPXX-PXGXXPXGXKXXFFXPGGXPXXXXXPQKXPP 988
P PP PP K P P P K P P P + PP
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP-----PSEAPP 1199
Query: 987 PXXXXGGXFXPPPPXGGGXPPXPXXXKPP-PXGXXKXPPPP 868
G PPP P P PP P K PP P
Sbjct: 1200 VPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240
Score = 27.5 bits (58), Expect = 4.0
Identities = 24/100 (24%), Positives = 24/100 (24%), Gaps = 1/100 (1%)
Frame = -3
Query: 1164 PXXXPPPXXKXFXXPPXKKXXXXXXPXXPXGXXPXGXKXXFFXPGGXPXXXXXPQKXPPP 985
P PP PP K P P K P P PP
Sbjct: 1126 PSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAP-----PVPAPSSGIPP 1180
Query: 984 XXXXGGXFXPPPPXGGGXP-PXPXXXKPPPXGXXKXPPPP 868
P PP P P P PP PP P
Sbjct: 1181 VPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
Score = 27.1 bits (57), Expect = 5.3
Identities = 26/107 (24%), Positives = 26/107 (24%), Gaps = 4/107 (3%)
Frame = -3
Query: 1167 PPXXXP---PPXXKXFXXPPXKKXXXXXXPXXPXGXXPXGXKXXFFXPGGXPXXXXXPQK 997
PP P PP PP K P P P G P
Sbjct: 1032 PPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGI 1091
Query: 996 XPPPXXXXGGXFXPPPPXGGGXPPXPXXXKPPPXGXXKXPP-PPPXG 859
P P P P P P P P PP P P G
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSG 1138
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.7 bits (66), Expect = 0.43
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = -3
Query: 1005 PQKXPPPXXXXGGXFXPPPPXGGGXPPXPXXXKPPPXGXXKXPPPP 868
PQ PP PPPP P P P P G PPPP
Sbjct: 1694 PQSAAPPQM--SAPTPPPPPMS---VPPPPSAPPMPAGPPSAPPPP 1734
Score = 29.5 bits (63), Expect = 0.99
Identities = 17/57 (29%), Positives = 18/57 (31%)
Frame = -3
Query: 1023 PXXXXXPQKXPPPXXXXGGXFXPPPPXGGGXPPXPXXXKPPPXGXXKXPPPPPXGXK 853
P P PPP PPPP P P PPP P P G +
Sbjct: 1699 PPQMSAPTPPPPPMSV------PPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDR 1749
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Frame = -3
Query: 993 PPPXXXXGGXFXPPPP----XGGGXPPXPXXXKPPPXGXXKXPPP 871
PPP G PPPP G PP P +P G PPP
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEP---GEHMPPPP 250
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Frame = -3
Query: 993 PPPXXXXGGXFXPPPP----XGGGXPPXPXXXKPPPXGXXKXPPP 871
PPP G PPPP G PP P +P G PPP
Sbjct: 248 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP---GEHMPPPP 289
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Frame = -3
Query: 993 PPPXXXXGGXFXPPPP----XGGGXPPXPXXXKPPPXGXXKXPPP 871
PPP G PPPP G PP P +P G PPP
Sbjct: 287 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP---GEHMPPPP 328
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3
Query: 951 PPXGGGXPPXPXXXKPPPXGXXKXPPPPPXG 859
PP PP P +PP + PPPPP G
Sbjct: 5 PPGNPPPPPPPPGFEPP----SQPPPPPPPG 31
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 486 PXPPGGGXFXKXXKXPPPPPXXXKKKK 406
P PP G PPPPP KK+K
Sbjct: 11 PPPPPPGFEPPSQPPPPPPPGYVKKRK 37
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 486 PXPPGGGXFXKXXKXPPPPPXXXKKKK 406
P PP F + PPPPP KK+
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPPGYVKKR 36
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -3
Query: 957 PPPPXGGGXPPXPXXXKPPPXGXXK 883
PPPP G P PPP G K
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPPGYVK 34
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,968
Number of Sequences: 5004
Number of extensions: 41997
Number of successful extensions: 185
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 659412242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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