Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_B20
         (1188 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    48   3e-06
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    32   0.18 
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    30   0.72 
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    29   1.7  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    28   2.2  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   5.1  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    27   6.8  
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase...    27   6.8  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    27   6.8  

>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 2/180 (1%)
 Frame = +2

Query: 314 RLIWKIIVDFVVLACVSFPLLALLLWAEPYHRGYFEDDLSLRLPFK-QQSISEGLLAGVG 490
           +L W +  D+ VL  +S       +   P+ R +  +D+++  PF   + +    L   G
Sbjct: 9   KLFWNVYSDYAVLIAISLSYFVFDVLMLPFTRQFSLEDITISHPFALHEQVPTKYL---G 65

Query: 491 FAFIIFTVLITEIVRDRQGKGIGGKFLSGSLIPGWLWETYSTVGIFTFGAACQQLTANLA 670
              + F  L+          G G K  + SL+    W+  S +G+      C  L  +L 
Sbjct: 66  IICVFFPALVLY--------GFG-KLRNNSLL---FWK--SLMGLLYSTMVCG-LCVSLL 110

Query: 671 KYVIGRLRPHFFDVCRPIPDAGSSQNALGYIQEYRCS-GGDEALLKDMRLSFPSAHASFS 847
           K  +GR RP F   C+P      S    G +    CS    + +L+D   SFPS H SFS
Sbjct: 111 KNAVGRPRPDFLARCQPF----ESTPKTGLVDVLSCSVPWSDKVLQDGFRSFPSGHTSFS 166


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.9 bits (69), Expect = 0.18
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 657  VSC*QAAPNVKIPTVEYVSHSQPGMSDPDRNFPPIPLPCLSRTISV 520
            VS   AAP  ++P V  +S   P +  P  + PPIP+P  +  + +
Sbjct: 1000 VSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPI 1045


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 29.9 bits (64), Expect = 0.72
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
 Frame = +2

Query: 413 YFEDDLSLRLPFKQQSISEGLLAGVGF-AFIIFTVLITEI--VRDRQGKGIGGKFLSGSL 583
           Y +DD+ L  P+   SI  G+L       F++  VL+T++  V DR+ + +   + S  L
Sbjct: 114 YLQDDIDLSDPYTFLSIKRGILQYTWLKPFLVIAVLLTKVTGVYDREDQPV---YASADL 170

Query: 584 IPGWLWETYSTVGIFT 631
             G ++    T+ +++
Sbjct: 171 WIGLVYNISITLSLYS 186


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = -1

Query: 639 APNVKIPTVEYVSHSQPGMSDPDRNFPPIPLPCLSRTISVIKTVKIMKAKPTPAKSPSD 463
           A + +IP       + P  S P ++ PP  LP L  TIS   ++   +A P   KS SD
Sbjct: 606 AASKEIPVTSGSQTTAPKPS-PWKSLPPKHLPSLDETISREMSIASSEALPQVEKSNSD 663


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 455 QSISEGLLAGVGFAFIIFTVLITEIVRDRQGK 550
           Q    G++ G+GFAF I  +L+T +++   G+
Sbjct: 8   QGYGYGIVIGLGFAFAIVMILVTYVLKRYVGE 39


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 18/42 (42%), Positives = 20/42 (47%)
 Frame = +3

Query: 645 VNSSQPISRST*SGDCAHISSMSAGRSRTPDPRKTPSATSRS 770
           VNSS PI+ ST       I+S S   S TP    T   TS S
Sbjct: 498 VNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTS 539



 Score = 27.1 bits (57), Expect = 5.1
 Identities = 18/42 (42%), Positives = 20/42 (47%)
 Frame = +3

Query: 645  VNSSQPISRST*SGDCAHISSMSAGRSRTPDPRKTPSATSRS 770
            VNSS PI+ ST       I+S S   S TP    T   TS S
Sbjct: 2610 VNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTS 2651



 Score = 27.1 bits (57), Expect = 5.1
 Identities = 18/42 (42%), Positives = 20/42 (47%)
 Frame = +3

Query: 645  VNSSQPISRST*SGDCAHISSMSAGRSRTPDPRKTPSATSRS 770
            VNSS PI+ ST       I+S S   S TP    T   TS S
Sbjct: 2934 VNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTS 2975



 Score = 26.6 bits (56), Expect = 6.8
 Identities = 18/42 (42%), Positives = 20/42 (47%)
 Frame = +3

Query: 645  VNSSQPISRST*SGDCAHISSMSAGRSRTPDPRKTPSATSRS 770
            VNSS PI+ ST       I+S S   S TP    T   TS S
Sbjct: 1266 VNSSTPITSSTALNTSIPITSSSVLNSSTPITSSTALNTSTS 1307



 Score = 26.2 bits (55), Expect = 8.9
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +3

Query: 645  VNSSQPISRST*SGDCAHISSMSAGRSRTPDPRKTPSATSRSTDVAVAMRLS 800
            +NSS PI+ ST       I+S S   S TP    T   TS     + A+  S
Sbjct: 1086 LNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTALNTS 1137



 Score = 26.2 bits (55), Expect = 8.9
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +3

Query: 645  VNSSQPISRST*SGDCAHISSMSAGRSRTPDPRKTPSATS 764
            VNSS PI+ ST       I+S S   S TP    T   TS
Sbjct: 2814 VNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTALNTS 2853


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +3

Query: 621 ESSRLGPPVNSSQPISRST*SGDCAHISSMSAGRSRTPDPRKTPSATSRSTDVA 782
           E++ +GP +  SQ    +    D    +   +G+S  PD   TPSA + ST VA
Sbjct: 637 EATSVGPALEPSQ--GANVHKSDSELDNQNQSGKSN-PDTSATPSAPTESTTVA 687


>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
           Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 685 ETAPTFLR-CLQADPGRRILAKRPRLHP 765
           ETA  F++ CL+ DP +R+ A     HP
Sbjct: 262 ETAKDFIKKCLENDPSKRLTAADALKHP 289


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 723 SRTPDPRKTPSATSRSTDV 779
           SR PDP+  P A S+ T+V
Sbjct: 379 SRNPDPKAAPKAVSQKTNV 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,067,281
Number of Sequences: 5004
Number of extensions: 78496
Number of successful extensions: 370
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 639490422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)