Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_B18
         (1220 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0326 + 33150599-33150907,33151013-33151104,33151961-331520...    39   0.009
10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188...    32   1.1  

>03_06_0326 +
           33150599-33150907,33151013-33151104,33151961-33152057,
           33152585-33152656,33152750-33152812,33152905-33153045,
           33153603-33153698,33154120-33154404,33154692-33154851,
           33154947-33155089,33155688-33155861,33156386-33156652,
           33156737-33156856
          Length = 672

 Score = 38.7 bits (86), Expect = 0.009
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +1

Query: 643 NEYQCYTNQDNPFGDSALTNTFVWAKKLAKE 735
           N    Y+N  NPFGD  LT  FVW KK+ ++
Sbjct: 114 NAVSGYSNDSNPFGDPNLTEKFVWRKKIERD 144


>10_01_0167 +
           1876793-1877402,1877423-1877642,1877760-1879534,
           1880019-1880199,1881313-1881529
          Length = 1000

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -1

Query: 779 LFKASSSSLDTFFTPSLASFLAQTNVLVSAESPNG--LSWL 663
           +F +SSS+ + F  P LA+  A+ N LV  +SP    ++WL
Sbjct: 148 IFCSSSSNTNAFVDPRLAALFAEENHLVGIDSPRDELVNWL 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,373,698
Number of Sequences: 37544
Number of extensions: 236617
Number of successful extensions: 454
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3747967944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)