Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_B16
(1151 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0677 + 10343089-10343604,10344316-10344462,10344539-103446... 223 2e-58
07_03_1773 - 29422660-29422806,29423103-29423201,29423811-294239... 217 1e-56
10_08_0789 + 20569738-20570207,20573425-20573464,20573484-205735... 31 2.3
08_02_1260 - 25680618-25680677,25680763-25680893,25681085-256811... 30 3.0
04_03_0554 - 17075142-17075159,17075788-17076591,17076619-170767... 29 5.2
>03_02_0677 +
10343089-10343604,10344316-10344462,10344539-10344643,
10345411-10345509,10345662-10345814
Length = 339
Score = 223 bits (545), Expect = 2e-58
Identities = 121/274 (44%), Positives = 169/274 (61%), Gaps = 21/274 (7%)
Frame = +2
Query: 182 MP-LSCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXN 358
MP L CR Y+ ++PEV+ VM+ V+ IA+MGAYV LLEYNNIEGM +
Sbjct: 1 MPNLECRMYEPRFPEVDAAVMIQVKHIADMGAYVSLLEYNNIEGMILFSELSRRRIRSIS 60
Query: 359 KLIRVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLH 538
LI+VG+ EP +V+RVD++KGYIDLSKRRVS E+ + C +RY K+K V+SI+RHVAE L
Sbjct: 61 SLIKVGRQEPAIVLRVDRDKGYIDLSKRRVSEEEAHACEDRYNKSKLVHSIMRHVAETLG 120
Query: 539 YETSEQLEELYKKTAWYFEEKYKKKASAYDFFKQAAVDP-SVLD-------ECGLD---- 682
+ LE LY++ W Y+K A++ FK DP ++LD E G D
Sbjct: 121 ID----LEPLYQRIGWPL---YRKYGHAFEAFKLIVADPDAILDSLTYEEKETGADGQEV 173
Query: 683 --------EETKDVLLANIKRKLTSQAVKIRADIECACYGYEGIDAVRAALKAGLALSTV 838
E KD L+ NI+R++T Q +KIRAD+E C+ ++G+ ++ A++ A
Sbjct: 174 TKVVPAVTPEVKDALVKNIRRRMTPQPLKIRADVEMKCFQFDGVLHIKQAMRKAEAAGND 233
Query: 839 DMPIKINLIAPPLYVMTTSTPEKTDGLKALQDAI 940
+ P+KI L+APPLYV+TT T +K G+ L DAI
Sbjct: 234 NCPVKIKLVAPPLYVLTTQTLDKDQGISVLTDAI 267
>07_03_1773 -
29422660-29422806,29423103-29423201,29423811-29423915,
29423990-29424136,29424436-29424954
Length = 338
Score = 217 bits (531), Expect = 1e-56
Identities = 125/284 (44%), Positives = 166/284 (58%), Gaps = 22/284 (7%)
Frame = +2
Query: 182 MP-LSCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXN 358
MP L CR Y+ +PEVE VM+ V+ +AE+GAYV LLEYNNIEGM
Sbjct: 1 MPNLECRMYEAPFPEVETAVMIQVKHLAELGAYVSLLEYNNIEGMILYSELSRRRIRSIP 60
Query: 359 KLIRVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLH 538
LI+VG+ EP VV+RVD +KGYIDLSKRRVS D C +RY+K+K V+SI+RH+AE LH
Sbjct: 61 SLIKVGRQEPAVVLRVDHDKGYIDLSKRRVSHHDRRTCEDRYSKSKFVHSIMRHLAETLH 120
Query: 539 YETSEQLEELYKKTAWYFEEKYKKKASAYDFFKQAAVDP--SVLD-------ECGLDE-- 685
+ LE LY + AW Y+ A+D FK DP ++LD E G D+
Sbjct: 121 LD----LEPLYHRIAWPL---YRTYGHAFDAFKLIVADPDAAILDSLTYDLTETGPDDQE 173
Query: 686 ----------ETKDVLLANIKRKLTSQAVKIRADIECACYGYEGIDAVRAALKAGLALST 835
E KD L+ NI+R++T Q KIRADI+ C+ Y+G+ ++ A++ A
Sbjct: 174 VTKTLPAVTPEIKDALIKNIRRRMTPQPHKIRADIDMKCFQYDGVLHIQEAMRKAEAAGN 233
Query: 836 VDMPIKINLIAPPLYVMTTSTPEKTDGLKALQDAIDKXQRTSXK 967
D P+KI L+A PLYV+TT T +K G+ L +AI T K
Sbjct: 234 KDCPVKIKLVAAPLYVLTTETLDKHQGISVLNNAIKACGETIEK 277
>10_08_0789 +
20569738-20570207,20573425-20573464,20573484-20573536,
20573633-20574212,20574323-20575384,20575631-20575813,
20576112-20576199,20576285-20576532,20576712-20577053,
20579026-20579163,20579521-20579547
Length = 1076
Score = 30.7 bits (66), Expect = 2.3
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 824 ALSTVDMPIKINLIAPPLYVMTTSTPEKTDGLKALQDAIDKXQRTSXKQVESS 982
A+ D PI +L+APP V+T E D L + + +D+ Q + K + S+
Sbjct: 363 AVILYDCPIINDLLAPPSMVVTCCNEELVDVLMSQKITLDEVQLEAAKAIYSA 415
>08_02_1260 -
25680618-25680677,25680763-25680893,25681085-25681163,
25681250-25681280,25681358-25681410,25681441-25681511,
25681610-25681678,25681776-25681889,25683101-25683293
Length = 266
Score = 30.3 bits (65), Expect = 3.0
Identities = 8/20 (40%), Positives = 18/20 (90%)
Frame = +2
Query: 581 AWYFEEKYKKKASAYDFFKQ 640
AWY++E+Y+K+A +D++++
Sbjct: 19 AWYWDERYRKEAGPFDWYQK 38
>04_03_0554 -
17075142-17075159,17075788-17076591,17076619-17076719,
17077095-17077751,17077827-17078768,17078837-17078896,
17079131-17079763,17079886-17079942,17080177-17080702
Length = 1265
Score = 29.5 bits (63), Expect = 5.2
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 5/139 (3%)
Frame = +2
Query: 593 EEKYKKKASAYDFFKQAAVDPSVLDECGLDE--ETKDVLLANIKRKLTSQAVKIRADIEC 766
EEK KK+ AY K +V + + + + + K + Q K A ++
Sbjct: 237 EEKLKKRREAYKRNKDLNALANVEEPLHATHSGQAEQEIASQDKGSIPKQEKKALARMK- 295
Query: 767 ACYGYEGIDAVRAALKAGLALSTV--DMPIKINL-IAPPLYVMTTSTPEKTDGLKALQDA 937
Y G D +A ++ +A + + P K ++ + P Y+ ++P+ L A
Sbjct: 296 --YRNMGPDQKKAKIEQVIANRALRRNTPSKYSIAMESPTYIALDTSPQVPTRLHRKHIA 353
Query: 938 IDKXQRTSXKQVESSTFRW 994
D+ Q +Q ES T RW
Sbjct: 354 HDERQALVSRQNESFTIRW 372
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,100,216
Number of Sequences: 37544
Number of extensions: 455572
Number of successful extensions: 1165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3503158800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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