Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_B16
(1151 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-10|AAK27873.2| 342|Caenorhabditis elegans Hypothetical... 297 9e-81
Z81546-9|CAD45596.2| 782|Caenorhabditis elegans Hypothetical pr... 30 3.5
Z81546-8|CAB04456.1| 676|Caenorhabditis elegans Hypothetical pr... 30 3.5
AY313179-1|AAP79304.1| 782|Caenorhabditis elegans myotubularin-... 30 3.5
AY313177-1|AAP79302.1| 676|Caenorhabditis elegans myotubularin-... 30 3.5
AC084155-5|AAK84606.1| 433|Caenorhabditis elegans Hypothetical ... 29 4.7
U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical pr... 29 8.2
>AC087079-10|AAK27873.2| 342|Caenorhabditis elegans Hypothetical
protein Y37E3.10 protein.
Length = 342
Score = 297 bits (729), Expect = 9e-81
Identities = 140/252 (55%), Positives = 188/252 (74%)
Frame = +2
Query: 188 LSCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXNKLI 367
+ CRFY+ ++P+VE+ V+ NV+ IA+MGAYV L EYN+ EGM NKLI
Sbjct: 1 MKCRFYENQFPDVEETVVANVKMIADMGAYVRLSEYNDKEGMILLSELSRRRIRSVNKLI 60
Query: 368 RVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYET 547
RVG++E VVVIRVDK+KGYIDLSKRRV +D+ +C ER+A AK VNSILRHVAE + Y T
Sbjct: 61 RVGRSESVVVIRVDKDKGYIDLSKRRVYQKDLKQCDERFANAKMVNSILRHVAEQVGYTT 120
Query: 548 SEQLEELYKKTAWYFEEKYKKKASAYDFFKQAAVDPSVLDECGLDEETKDVLLANIKRKL 727
E+LE+LY+KTAW+F+ K K+KA++YD FK+A +P++LDEC + + K+ LL +I++KL
Sbjct: 121 DEELEDLYQKTAWHFDRKEKRKAASYDAFKKAITEPTILDECDISADIKEKLLEDIRKKL 180
Query: 728 TSQAVKIRADIECACYGYEGIDAVRAALKAGLALSTVDMPIKINLIAPPLYVMTTSTPEK 907
T QAVKIRADIE +C+ Y+GIDAV+AAL AG S PIKINLIA P +V+TT T ++
Sbjct: 181 TPQAVKIRADIEVSCFDYDGIDAVKAALIAGKNCSNGTFPIKINLIAAPHFVVTTQTLDR 240
Query: 908 TDGLKALQDAID 943
G++A+ +D
Sbjct: 241 EGGIEAVNSILD 252
>Z81546-9|CAD45596.2| 782|Caenorhabditis elegans Hypothetical
protein F53A2.8b protein.
Length = 782
Score = 29.9 bits (64), Expect = 3.5
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +2
Query: 389 VVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETSEQLEEL 568
++VIR + L R S +D+Y+ +R AK +VN V ELL +E E +E++
Sbjct: 175 MLVIRCKHFQVITLLISRDKSCQDLYETLQRAAKPVSVN-----VTELLAFENREPVEDV 229
Query: 569 --YKKTAWYFE 595
+++ W E
Sbjct: 230 RGWRRLDWNSE 240
>Z81546-8|CAB04456.1| 676|Caenorhabditis elegans Hypothetical
protein F53A2.8a protein.
Length = 676
Score = 29.9 bits (64), Expect = 3.5
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +2
Query: 389 VVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETSEQLEEL 568
++VIR + L R S +D+Y+ +R AK +VN V ELL +E E +E++
Sbjct: 69 MLVIRCKHFQVITLLISRDKSCQDLYETLQRAAKPVSVN-----VTELLAFENREPVEDV 123
Query: 569 --YKKTAWYFE 595
+++ W E
Sbjct: 124 RGWRRLDWNSE 134
>AY313179-1|AAP79304.1| 782|Caenorhabditis elegans
myotubularin-related protein MTM-6B protein.
Length = 782
Score = 29.9 bits (64), Expect = 3.5
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +2
Query: 389 VVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETSEQLEEL 568
++VIR + L R S +D+Y+ +R AK +VN V ELL +E E +E++
Sbjct: 175 MLVIRCKHFQVITLLISRDKSCQDLYETLQRAAKPVSVN-----VTELLAFENREPVEDV 229
Query: 569 --YKKTAWYFE 595
+++ W E
Sbjct: 230 RGWRRLDWNSE 240
>AY313177-1|AAP79302.1| 676|Caenorhabditis elegans
myotubularin-related protein MTM-6A protein.
Length = 676
Score = 29.9 bits (64), Expect = 3.5
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +2
Query: 389 VVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETSEQLEEL 568
++VIR + L R S +D+Y+ +R AK +VN V ELL +E E +E++
Sbjct: 69 MLVIRCKHFQVITLLISRDKSCQDLYETLQRAAKPVSVN-----VTELLAFENREPVEDV 123
Query: 569 --YKKTAWYFE 595
+++ W E
Sbjct: 124 RGWRRLDWNSE 134
>AC084155-5|AAK84606.1| 433|Caenorhabditis elegans Hypothetical
protein Y45G5AM.7 protein.
Length = 433
Score = 29.5 bits (63), Expect = 4.7
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 5/135 (3%)
Frame = +2
Query: 368 RVGKTEPVVVIRVDKEKGYI--DLSKRRVS-AEDIYKCTERYAKAKAVNSILRHVAELLH 538
RVGK + VV+ +V+K G+I + +R + A ++ E + A N L + LH
Sbjct: 120 RVGKAQIVVMEKVEKATGHIIQEFHERELDLARNVEILQEENSNLTAKNEKLEETVDDLH 179
Query: 539 YETSEQLEELYKK-TAWYFEEKYKKKASAYDFFKQAAVDPSVLDECGLDEETKDVLL-AN 712
E LE K+ T + + K S+ + F + D + L+EET+ VL
Sbjct: 180 -EKVANLETSNKELTEINVDNERKISNSSDEIF--SLQDLLGKTKVQLEEETEKVLQERT 236
Query: 713 IKRKLTSQAVKIRAD 757
I L +Q +K R +
Sbjct: 237 IVENLKAQFLKERKE 251
>U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical
protein T19D7.1 protein.
Length = 497
Score = 28.7 bits (61), Expect = 8.2
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 507 RSCDM*QSSSIMKLLSNWKNFIK-KQLGTLKRNI 605
R D +SS KLL NWK F+K +++ +L RN+
Sbjct: 154 RKFDNSKSSCQKKLLKNWKIFLKIRKMLSLSRNV 187
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,881,786
Number of Sequences: 27780
Number of extensions: 418706
Number of successful extensions: 1161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3130337400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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