Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_B15
         (1142 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...   167   3e-42
SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c...    99   1e-21
SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom...    36   0.014
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    29   1.2  
SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces...    29   1.2  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    27   6.4  

>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score =  167 bits (406), Expect = 3e-42
 Identities = 86/253 (33%), Positives = 152/253 (60%)
 Frame = +3

Query: 165 VYKLIHPVKHFNDYISIKTRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTIVVCGIK 344
           ++K I P ++ +  ++   R DGR+  E R I +N N I TA+ SA+++ G  + VCGIK
Sbjct: 16  IFKKITPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIK 75

Query: 345 LELAVPKAEEPDLGFLITNVELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLKD 524
            E+A P    P+ G+++ N+EL  LCSSK++PGPPSD AQV++  + + ++ S  I+L+ 
Sbjct: 76  AEIAEPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQS 135

Query: 525 LCIVPDKLAWVVYCDMVCIDHDGSLVDACIIALIASFKTLLLPSVNYDTETEEIKVETNE 704
           LCI   K AWV+Y D++C+++DGS  D    AL A+ KT+ LP+  +D + E +   +  
Sbjct: 136 LCIFEKKAAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLPTAVWDEDLERVICASTL 195

Query: 705 RINLKIHGLPVATSFAVYEHFQSQIILLTDPTNYEEEMCGGNGSNLIISYNKGLLCGIQK 884
              +++     + S++V++       LL DPT+ EE++       ++++ +K ++  I+ 
Sbjct: 196 TRPVQLSTEVRSFSWSVFDD-----KLLADPTDEEEDL-STEFLTIMLNSSKNIVKIIKL 249

Query: 885 XGGGSYXQKIMRK 923
             GG++ Q ++ K
Sbjct: 250 --GGTHIQPLLLK 260


>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 291

 Score = 99.1 bits (236), Expect = 1e-21
 Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 2/226 (0%)
 Frame = +3

Query: 222 RLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTIVVCGIKLELAVPKAEEPDLGFLITN 401
           RLDGR   + R++++             V  G+T V+  I  E+  P  + P  G     
Sbjct: 24  RLDGRQLSDFRSLEIQFGK---EYGQVDVSFGHTRVMARITTEITKPYTDRPFDGIFSIT 80

Query: 402 VELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLKDLCIVPDKLAWVVYCDMVCI 581
            EL  L  S +  G  SD   VI+ ++ + ++ S  +D + LCI+  +  W V   +  I
Sbjct: 81  TELTPLAYSAFEAGRVSDQEIVISRLIEKAVRRSNALDTESLCIISGQKCWHVRASVHFI 140

Query: 582 DHDGSLVDACIIALIASFKTLLLPSVNYDTETEEI-KVETNERINLKIHGLPVATSFAVY 758
           +HDG+LVDA  IA+IA+      P +    E   +  VE    + L I  +P+  +F+ +
Sbjct: 141 NHDGNLVDAACIAVIAALCHFRRPELTVVGEEVTVHPVEERVPVPLSILHMPICVTFSFF 200

Query: 759 EHFQSQIILLTDPTNYEEEMCGGNGSNLIISYNKGL-LCGIQKXGG 893
            + +  I+   D T  EE++C G   ++ I+ NK   +C I K GG
Sbjct: 201 NNGELAIV---DATLEEEDLCNG---SMTITLNKNREVCQIYKAGG 240


>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 35.5 bits (78), Expect = 0.014
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +3

Query: 186 VKHFNDYISIK-TRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTIVVC 335
           + HF + +S++  R DGR +DE RN +  +    + + SA ++ GNT V+C
Sbjct: 1   MSHF-EILSLEGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLC 50


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +3

Query: 180 HPVKHFN---DYISIKTRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGN 320
           HPV  ++   +Y++ + R     F EH+N+K+ V S      SA  K  N
Sbjct: 529 HPVILYDPIHEYVNHELRKRENEFSEHKNVKIFVASYNLNGCSATTKLEN 578


>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 298

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +3

Query: 267 NVNSIKTADASAVVKCGNTIVVCGIKLELAVPKAEEPDLGFLITNVELPALCSSKYRPG 443
           +V  I    +   V CG  + V  +K  +A    ++P+  FL+TN +     + K+ PG
Sbjct: 141 DVEKIGPDPSVGAVLCGMDMHVTYLKYCMAFQYLQDPNCAFLLTNQDSTFPTNGKFLPG 199


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 777 IILLTDPTNYEEEMCGGNGSNLIISY 854
           + LL  P NYE E+   +G N++  Y
Sbjct: 576 LTLLEPPVNYENEVESSSGENIVSMY 601


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,729,458
Number of Sequences: 5004
Number of extensions: 71016
Number of successful extensions: 185
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 609607692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)