Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_B15
         (1142 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0222 + 11880333-11880551,11880667-11880736,11880839-118809...    92   7e-19
02_04_0185 - 20748206-20748405,20749067-20749232,20749373-207494...    83   4e-16
12_02_0002 + 12119832-12120003,12120620-12120866,12121011-121210...    52   6e-07
09_04_0496 + 18079905-18081586,18084825-18084868,18086396-180865...    30   3.9  
06_03_0784 - 24557089-24557198,24557296-24560725                       29   5.2  
01_05_0429 + 22070636-22070662,22071490-22071577,22071908-220721...    29   5.2  
01_03_0149 + 13194866-13195012,13196576-13196828,13197810-131981...    29   5.2  

>11_03_0222 +
           11880333-11880551,11880667-11880736,11880839-11880944,
           11881490-11881556,11881597-11881692
          Length = 185

 Score = 92.3 bits (219), Expect = 7e-19
 Identities = 42/134 (31%), Positives = 75/134 (55%)
 Frame = +3

Query: 162 EVYKLIHPVKHFNDYISIKTRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTIVVCGI 341
           E Y+ + P+     ++    R D R   E R   + + ++ +A  SA+V+ G+T ++  I
Sbjct: 20  EAYRRLFPLAFLERHLRESVRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASI 79

Query: 342 KLELAVPKAEEPDLGFLITNVELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLK 521
           KLE+  P  E PD G +     +P +CS   RPG P++ A VI+  + +I+ +S  ++LK
Sbjct: 80  KLEVMSPSGEAPDEGSIAVEFHMPPICSPLVRPGRPAEVAPVISKNLEDILMSSGMLNLK 139

Query: 522 DLCIVPDKLAWVVY 563
           +LC++  K +W+ Y
Sbjct: 140 ELCLISGKASWLAY 153


>02_04_0185 -
           20748206-20748405,20749067-20749232,20749373-20749471,
           20749487-20749561,20749663-20749743,20750121-20750274,
           20750330-20750425,20750518-20750727,20750746-20750957
          Length = 430

 Score = 83.0 bits (196), Expect = 4e-16
 Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 17/196 (8%)
 Frame = +3

Query: 291 DASAVVKCGNTIVVCGIKLELAVPKAEEPDLGFLITNVELPALCSSKYRPGPPSDYAQVI 470
           D SA V+ G+T V+     +L  P  + P+ G L    E   +    + PG P + A  +
Sbjct: 73  DGSAEVQLGDTRVMGYATAQLVQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGESAIEL 132

Query: 471 NNIVSEIIKNSKCIDLKDLCIVPDKLAWVVYCDMVCIDHDG-------------SLVDAC 611
             +V   ++ S+ +D++ LC+V  K  W V  D+  +D+ G             +L+DA 
Sbjct: 133 GRVVDRGLRESRAVDMESLCVVAGKHVWSVRVDLHILDNGGELNVPDAMVLSLRNLIDAA 192

Query: 612 IIALIASFKTLLLPSVNYDTET-EEIKV---ETNERINLKIHGLPVATSFAVYEHFQSQI 779
            IA +A+  T   P      E  +++ V   E  + + L IH LP+A +FA   +F    
Sbjct: 193 NIAALAALSTFRRPECTVGGEDGQQVTVHDPEVRDPLPLTIHHLPIAVTFA---YFGEGN 249

Query: 780 ILLTDPTNYEEEMCGG 827
           I++ DPT  EE + GG
Sbjct: 250 IMVIDPTYKEEAVMGG 265


>12_02_0002 +
           12119832-12120003,12120620-12120866,12121011-12121050,
           12121584-12121676,12124850-12124928,12124973-12125019,
           12126178-12126266,12126353-12126424,12126617-12126710,
           12127167-12127206,12127321-12127445,12130472-12130615,
           12131510-12131740
          Length = 490

 Score = 52.4 bits (120), Expect = 6e-07
 Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 10/174 (5%)
 Frame = +3

Query: 426 SKYRPGPPSDYA--QVINNIV-SEIIKNSKCIDLKDLCIVPDKLAWVVYCDMVCIDHDGS 596
           +K   G  SD A  +VIN ++  + +     IDL  L +V  K+ W +Y D + +  DG+
Sbjct: 297 AKRSSGWSSDDASGEVINLLIFKKTLMKRAAIDLSSLIVVDGKVCWDLYIDGLVVSSDGN 356

Query: 597 LVDACIIALIASFKTLLLPSVNYD-----TETEEIKVETNERINLKIHGLPV-ATSFAVY 758
           L+DA   A+  +     +P VN        E  E+ V   E +      +PV  T   V 
Sbjct: 357 LLDALAAAIKVALSDTGIPKVNVSLSATTDEEPEVNVSDEEFLQFDTSSVPVIVTLTKVG 416

Query: 759 EHFQSQIILLTDPTNYEEEMCGGNGSNLIISYNK-GLLCGIQKXGGGSYXQKIM 917
           +H+      + D T+ EE       S + +S N+ G + G+ K GG      ++
Sbjct: 417 KHY------IVDATSEEESQM---SSAVSVSVNRHGQIRGLTKRGGAGLDPSVI 461


>09_04_0496 +
           18079905-18081586,18084825-18084868,18086396-18086502,
           18087069-18087674,18087789-18088013,18088102-18088167,
           18088268-18088336,18088511-18088582,18088672-18088848,
           18089978-18090115
          Length = 1061

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 375 PDLGFLITNVELPALCSSKYRPGPPSDYAQ 464
           P + F +T+  L A  +   RPGPPS  AQ
Sbjct: 4   PTVPFFLTSTTLAAAAAKPQRPGPPSPPAQ 33


>06_03_0784 - 24557089-24557198,24557296-24560725
          Length = 1179

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
 Frame = +3

Query: 507  CIDLKDLCIV--PDKLAWVVYCDMVCIDHDGSLVDACIIALIASFKTLLLPSVNYDTETE 680
            C  LK+L +V  P     V+  ++VC  H    +D CII  + S  +L+     +  ++E
Sbjct: 881  CPKLKELPLVFPPPVEMKVLSSNIVCTQHTDHRLDTCIIQKV-SLTSLVGIFHLWHLDSE 939

Query: 681  EIKVETNERINLKIHGL 731
            EI   + +R N+  +GL
Sbjct: 940  EIADTSFDRANMLNNGL 956


>01_05_0429 +
           22070636-22070662,22071490-22071577,22071908-22072168,
           22072925-22073161,22073251-22073375,22074093-22074569,
           22074655-22075569
          Length = 709

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = -2

Query: 652 GNSNVLKLAISAMMHASTRLPSWSIHTISQYTTHANLSGTMQRSFRSMHLEFLIIS 485
           G+S+ LK A  A         +  IH ++  T H      + R+FRS+ L FL+IS
Sbjct: 138 GSSSALKSAGQATKDGILGTANAPIHMVTSETGH--FKDQIWRTFRSLALTFLVIS 191


>01_03_0149 +
           13194866-13195012,13196576-13196828,13197810-13198173,
           13198283-13198501,13199888-13200002,13200697-13200948,
           13201149-13201442
          Length = 547

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 221 SFDRNIIVEMFYWMY*FIYFGHFKSMR 141
           SF R+ IVEM++WM   +Y  H+   R
Sbjct: 267 SFSRDRIVEMYFWMNGALYEPHYSHSR 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,714,214
Number of Sequences: 37544
Number of extensions: 435757
Number of successful extensions: 862
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3468127212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)