Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_B15
(1142 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC020773-1|AAH20773.1| 276|Homo sapiens exosome component 8 pro... 229 1e-59
AF025438-1|AAC39558.1| 265|Homo sapiens Opa-interacting protein... 228 3e-59
AL138706-8|CAI14013.1| 275|Homo sapiens RP11-421P11.3 protein. 228 3e-59
BC142978-1|AAI42979.1| 439|Homo sapiens exosome component 9 pro... 127 7e-29
AJ517294-1|CAD56889.1| 456|Homo sapiens polymyositis/scleroderm... 127 7e-29
AJ505989-1|CAD44530.1| 439|Homo sapiens polymyositis/scleroderm... 127 7e-29
D29958-1|BAA06226.1| 290|Homo sapiens KIAA0116 protein. 100 9e-21
BC012831-1|AAH12831.1| 291|Homo sapiens exosome component 7 pro... 100 9e-21
U09215-1|AAA18832.1| 372|Homo sapiens PM-Scl-75 autoantigen pro... 93 2e-18
M58460-1|AAA58384.1| 355|Homo sapiens autoantigen protein. 93 2e-18
AC079341-2|AAY40968.1| 355|Homo sapiens unknown protein. 93 2e-18
BC053660-1|AAH53660.1| 783|Homo sapiens polyribonucleotide nucl... 33 1.5
AY027528-1|AAK13047.1| 783|Homo sapiens 3'-5' RNA exonuclease p... 33 1.5
AK027437-1|BAB55109.1| 504|Homo sapiens protein ( Homo sapiens ... 33 1.5
AJ458465-1|CAD30289.1| 783|Homo sapiens polynucleotide phosphor... 33 1.5
AC015982-3|AAY24271.1| 783|Homo sapiens unknown protein. 33 1.5
>BC020773-1|AAH20773.1| 276|Homo sapiens exosome component 8
protein.
Length = 276
Score = 229 bits (560), Expect = 1e-59
Identities = 104/246 (42%), Positives = 158/246 (64%)
Frame = +3
Query: 156 MSEVYKLIHPVKHFNDYISIKTRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTIVVC 335
M+ +K + P++++ ++ R DGR E R +N+ SI TAD SA+VK GNT V+C
Sbjct: 1 MAAGFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVIC 60
Query: 336 GIKLELAVPKAEEPDLGFLITNVELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCID 515
G+K E A P + PD G+++ NV+LP LCSS++R GPP + AQV + ++++I+NS+ I
Sbjct: 61 GVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQ 120
Query: 516 LKDLCIVPDKLAWVVYCDMVCIDHDGSLVDACIIALIASFKTLLLPSVNYDTETEEIKVE 695
+DLCI P KL WV+YCD++C+D+DG+++DAC AL+A+ K + LP V + ET +V
Sbjct: 121 KEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVN 180
Query: 696 TNERINLKIHGLPVATSFAVYEHFQSQIILLTDPTNYEEEMCGGNGSNLIISYNKGLLCG 875
++ L I PVATSFAV++ +L+ DPT EE + G+ I+ +G LC
Sbjct: 181 LKKKSYLNIRTHPVATSFAVFD----DTLLIVDPTGEEEHL--ATGTLTIVMDEEGKLCC 234
Query: 876 IQKXGG 893
+ K GG
Sbjct: 235 LHKPGG 240
>AF025438-1|AAC39558.1| 265|Homo sapiens Opa-interacting protein
OIP2 protein.
Length = 265
Score = 228 bits (558), Expect = 3e-59
Identities = 103/242 (42%), Positives = 156/242 (64%)
Frame = +3
Query: 168 YKLIHPVKHFNDYISIKTRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTIVVCGIKL 347
+K + P++++ ++ R DGR E R +N+ SI TAD SA+VK GNT V+CG+K
Sbjct: 3 FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKA 62
Query: 348 ELAVPKAEEPDLGFLITNVELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLKDL 527
E A P + PD G+++ NV+LP LCSS++R GPP + AQV + ++++I+NS+ I +DL
Sbjct: 63 EFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDL 122
Query: 528 CIVPDKLAWVVYCDMVCIDHDGSLVDACIIALIASFKTLLLPSVNYDTETEEIKVETNER 707
CI P KL WV+YCD++C+D+DG+++DAC AL+A+ K + LP V + ET +V ++
Sbjct: 123 CISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKK 182
Query: 708 INLKIHGLPVATSFAVYEHFQSQIILLTDPTNYEEEMCGGNGSNLIISYNKGLLCGIQKX 887
L I PVATSFAV++ +L+ DPT EE + G+ I+ +G LC + K
Sbjct: 183 SYLNIRTHPVATSFAVFD----DTLLIVDPTGEEEHL--ATGTLTIVMDEEGKLCCLHKP 236
Query: 888 GG 893
GG
Sbjct: 237 GG 238
>AL138706-8|CAI14013.1| 275|Homo sapiens RP11-421P11.3 protein.
Length = 275
Score = 228 bits (557), Expect = 3e-59
Identities = 105/253 (41%), Positives = 160/253 (63%)
Frame = +3
Query: 156 MSEVYKLIHPVKHFNDYISIKTRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTIVVC 335
M+ +K + P++++ ++ R DGR E R +N+ SI TAD SA+VK GNT V+C
Sbjct: 1 MAAGFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVIC 60
Query: 336 GIKLELAVPKAEEPDLGFLITNVELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCID 515
G+K E A P + PD G+++ NV+LP LCSS++R GPP + AQV + ++++I+NS+ I
Sbjct: 61 GVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQ 120
Query: 516 LKDLCIVPDKLAWVVYCDMVCIDHDGSLVDACIIALIASFKTLLLPSVNYDTETEEIKVE 695
+DLCI P KL WV+YCD++C+D+DG+++DAC AL+A+ K + LP V + ET +V
Sbjct: 121 KEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVN 180
Query: 696 TNERINLKIHGLPVATSFAVYEHFQSQIILLTDPTNYEEEMCGGNGSNLIISYNKGLLCG 875
++ L I PVATSFAV++ +L+ DPT EE + G+ I+ +G LC
Sbjct: 181 LKKKSYLNIRTHPVATSFAVFD----DTLLIVDPTGEEEHL--ATGTLTIVMDEEGKLCC 234
Query: 876 IQKXGGGSYXQKI 914
+ K G G K+
Sbjct: 235 LHKPGIGLTGAKL 247
>BC142978-1|AAI42979.1| 439|Homo sapiens exosome component 9
protein.
Length = 439
Score = 127 bits (307), Expect = 7e-29
Identities = 78/231 (33%), Positives = 115/231 (49%), Gaps = 2/231 (0%)
Frame = +3
Query: 207 ISIKTRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTIVVCGIKLELAVPKAEEPDLG 386
I K RLDGR ++RNI++ S T +V+ G T V+ + EL PK G
Sbjct: 18 IEEKKRLDGRQTYDYRNIRI---SFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEG 74
Query: 387 FLITNVELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLKDLCIVPDKLAWVVYC 566
L N+EL + + + PG SD +N ++ ++NSKCID + LC+V + W +
Sbjct: 75 ILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRV 134
Query: 567 DMVCIDHDGSLVDACIIALIASFKTLLLPSVNYD-TETEEIKVETNERINLKIHGLPVAT 743
D+ ++HDG+++DA IA I + P V+ E E + + L IH +P+
Sbjct: 135 DLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICV 194
Query: 744 SFAVYEHFQSQIILLTDPTNYEEEMCGGNGSNLIISYNKGL-LCGIQKXGG 893
SFA FQ LL DP EE + G L+I+ NK +C IQ GG
Sbjct: 195 SFA---FFQQGAYLLVDPNEREERVMDG---LLVIAMNKHREICTIQSSGG 239
>AJ517294-1|CAD56889.1| 456|Homo sapiens polymyositis/scleroderma
autoantigen 1 protein.
Length = 456
Score = 127 bits (307), Expect = 7e-29
Identities = 78/231 (33%), Positives = 115/231 (49%), Gaps = 2/231 (0%)
Frame = +3
Query: 207 ISIKTRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTIVVCGIKLELAVPKAEEPDLG 386
I K RLDGR ++RNI++ S T +V+ G T V+ + EL PK G
Sbjct: 18 IEEKKRLDGRQTYDYRNIRI---SFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEG 74
Query: 387 FLITNVELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLKDLCIVPDKLAWVVYC 566
L N+EL + + + PG SD +N ++ ++NSKCID + LC+V + W +
Sbjct: 75 ILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRV 134
Query: 567 DMVCIDHDGSLVDACIIALIASFKTLLLPSVNYD-TETEEIKVETNERINLKIHGLPVAT 743
D+ ++HDG+++DA IA I + P V+ E E + + L IH +P+
Sbjct: 135 DLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICV 194
Query: 744 SFAVYEHFQSQIILLTDPTNYEEEMCGGNGSNLIISYNKGL-LCGIQKXGG 893
SFA FQ LL DP EE + G L+I+ NK +C IQ GG
Sbjct: 195 SFA---FFQQGTYLLVDPNEREERVMDG---LLVIAMNKHREICTIQSSGG 239
>AJ505989-1|CAD44530.1| 439|Homo sapiens polymyositis/scleroderma
autoantigen 1 protein.
Length = 439
Score = 127 bits (307), Expect = 7e-29
Identities = 78/231 (33%), Positives = 115/231 (49%), Gaps = 2/231 (0%)
Frame = +3
Query: 207 ISIKTRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTIVVCGIKLELAVPKAEEPDLG 386
I K RLDGR ++RNI++ S T +V+ G T V+ + EL PK G
Sbjct: 18 IEEKKRLDGRQTYDYRNIRI---SFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEG 74
Query: 387 FLITNVELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLKDLCIVPDKLAWVVYC 566
L N+EL + + + PG SD +N ++ ++NSKCID + LC+V + W +
Sbjct: 75 ILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRV 134
Query: 567 DMVCIDHDGSLVDACIIALIASFKTLLLPSVNYD-TETEEIKVETNERINLKIHGLPVAT 743
D+ ++HDG+++DA IA I + P V+ E E + + L IH +P+
Sbjct: 135 DLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICV 194
Query: 744 SFAVYEHFQSQIILLTDPTNYEEEMCGGNGSNLIISYNKGL-LCGIQKXGG 893
SFA FQ LL DP EE + G L+I+ NK +C IQ GG
Sbjct: 195 SFA---FFQQGTYLLVDPNEREERVMDG---LLVIAMNKHREICTIQSSGG 239
>D29958-1|BAA06226.1| 290|Homo sapiens KIAA0116 protein.
Length = 290
Score = 100 bits (240), Expect = 9e-21
Identities = 67/233 (28%), Positives = 115/233 (49%), Gaps = 7/233 (3%)
Frame = +3
Query: 222 RLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTIVVCGIKLELAVPKAEEPDLGFLITN 401
R+DGR +++R +++ + + SA VK G+T ++ G+K E+ PK E+P+ G+L
Sbjct: 22 RVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLEKPNEGYLEFF 81
Query: 402 VELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLKDLCIVPDKLAWVVYCDMVCI 581
V+ A + ++ D I N + I N +DLK LCI P + WV+Y D++ +
Sbjct: 82 VDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVLLL 141
Query: 582 DHDGSLVDACIIALIASFKTLLLPSVNYDTETE-----EIKVETNERINLKIHGLPVATS 746
+ G+L DA IA+ A+ +P V + E E+ + + I L + +P +
Sbjct: 142 ECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCIVT 201
Query: 747 FAV--YEHFQSQIILLTDPTNYEEEMCGGNGSNLIISYNKGLLCGIQKXGGGS 899
Y H + D T +EE C S L+ +KG++ ++K G GS
Sbjct: 202 LCKIGYRH-------VVDAT-LQEEAC-SLASLLVSVTSKGVVTCMRKVGKGS 245
>BC012831-1|AAH12831.1| 291|Homo sapiens exosome component 7
protein.
Length = 291
Score = 100 bits (240), Expect = 9e-21
Identities = 67/233 (28%), Positives = 115/233 (49%), Gaps = 7/233 (3%)
Frame = +3
Query: 222 RLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTIVVCGIKLELAVPKAEEPDLGFLITN 401
R+DGR +++R +++ + + SA VK G+T ++ G+K E+ PK E+P+ G+L
Sbjct: 23 RVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLEKPNEGYLEFF 82
Query: 402 VELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLKDLCIVPDKLAWVVYCDMVCI 581
V+ A + ++ D I N + I N +DLK LCI P + WV+Y D++ +
Sbjct: 83 VDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVLLL 142
Query: 582 DHDGSLVDACIIALIASFKTLLLPSVNYDTETE-----EIKVETNERINLKIHGLPVATS 746
+ G+L DA IA+ A+ +P V + E E+ + + I L + +P +
Sbjct: 143 ECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCIVT 202
Query: 747 FAV--YEHFQSQIILLTDPTNYEEEMCGGNGSNLIISYNKGLLCGIQKXGGGS 899
Y H + D T +EE C S L+ +KG++ ++K G GS
Sbjct: 203 LCKIGYRH-------VVDAT-LQEEAC-SLASLLVSVTSKGVVTCMRKVGKGS 246
>U09215-1|AAA18832.1| 372|Homo sapiens PM-Scl-75 autoantigen
protein.
Length = 372
Score = 92.7 bits (220), Expect = 2e-18
Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 2/161 (1%)
Frame = +3
Query: 417 LCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLKDLCIVPDKLAWVVYCDMVCIDHDGS 596
+ + + PG SD +N ++ ++NSKCID + LC+V + W + D+ ++HDG+
Sbjct: 1 MAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGN 60
Query: 597 LVDACIIALIASFKTLLLPSVNYD-TETEEIKVETNERINLKIHGLPVATSFAVYEHFQS 773
++DA IA I + P V+ E E + + L IH +P+ SFA FQ
Sbjct: 61 IIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSFA---FFQQ 117
Query: 774 QIILLTDPTNYEEEMCGGNGSNLIISYNKGL-LCGIQKXGG 893
LL DP EE + G L+I+ NK +C IQ GG
Sbjct: 118 GTYLLVDPNEREERVMDG---LLVIAMNKHREICTIQSSGG 155
>M58460-1|AAA58384.1| 355|Homo sapiens autoantigen protein.
Length = 355
Score = 92.7 bits (220), Expect = 2e-18
Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 2/161 (1%)
Frame = +3
Query: 417 LCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLKDLCIVPDKLAWVVYCDMVCIDHDGS 596
+ + + PG SD +N ++ ++NSKCID + LC+V + W + D+ ++HDG+
Sbjct: 1 MAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGN 60
Query: 597 LVDACIIALIASFKTLLLPSVNYD-TETEEIKVETNERINLKIHGLPVATSFAVYEHFQS 773
++DA IA I + P V+ E E + + L IH +P+ SFA FQ
Sbjct: 61 IIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSFA---FFQQ 117
Query: 774 QIILLTDPTNYEEEMCGGNGSNLIISYNKGL-LCGIQKXGG 893
LL DP EE + G L+I+ NK +C IQ GG
Sbjct: 118 GTYLLVDPNEREERVMDG---LLVIAMNKHREICTIQSSGG 155
>AC079341-2|AAY40968.1| 355|Homo sapiens unknown protein.
Length = 355
Score = 92.7 bits (220), Expect = 2e-18
Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 2/161 (1%)
Frame = +3
Query: 417 LCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLKDLCIVPDKLAWVVYCDMVCIDHDGS 596
+ + + PG SD +N ++ ++NSKCID + LC+V + W + D+ ++HDG+
Sbjct: 1 MAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGN 60
Query: 597 LVDACIIALIASFKTLLLPSVNYD-TETEEIKVETNERINLKIHGLPVATSFAVYEHFQS 773
++DA IA I + P V+ E E + + L IH +P+ SFA FQ
Sbjct: 61 IIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSFA---FFQQ 117
Query: 774 QIILLTDPTNYEEEMCGGNGSNLIISYNKGL-LCGIQKXGG 893
LL DP EE + G L+I+ NK +C IQ GG
Sbjct: 118 GTYLLVDPNEREERVMDG---LLVIAMNKHREICTIQSSGG 155
>BC053660-1|AAH53660.1| 783|Homo sapiens polyribonucleotide
nucleotidyltransferase 1 protein.
Length = 783
Score = 33.5 bits (73), Expect = 1.5
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 222 RLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTIVVCGIKLE 350
R DGR+ RN+ V+ KT SA+ + G T V+C + +
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFD 400
>AY027528-1|AAK13047.1| 783|Homo sapiens 3'-5' RNA exonuclease
protein.
Length = 783
Score = 33.5 bits (73), Expect = 1.5
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 222 RLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTIVVCGIKLE 350
R DGR+ RN+ V+ KT SA+ + G T V+C + +
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFD 400
>AK027437-1|BAB55109.1| 504|Homo sapiens protein ( Homo sapiens
cDNA FLJ14531 fis, clone NT2RM2000371, weakly similar to
POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (EC 2.7.7.8).
).
Length = 504
Score = 33.5 bits (73), Expect = 1.5
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 222 RLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTIVVCGIKLE 350
R DGR+ RN+ V+ KT SA+ + G T V+C + +
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFD 400
>AJ458465-1|CAD30289.1| 783|Homo sapiens polynucleotide
phosphorylase-like protein protein.
Length = 783
Score = 33.5 bits (73), Expect = 1.5
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 222 RLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTIVVCGIKLE 350
R DGR+ RN+ V+ KT SA+ + G T V+C + +
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFD 400
>AC015982-3|AAY24271.1| 783|Homo sapiens unknown protein.
Length = 783
Score = 33.5 bits (73), Expect = 1.5
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 222 RLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTIVVCGIKLE 350
R DGR+ RN+ V+ KT SA+ + G T V+C + +
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFD 400
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,074,506
Number of Sequences: 237096
Number of extensions: 2623643
Number of successful extensions: 3955
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3946
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 15976881214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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