Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_B15
         (1142 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-15|AAC48298.2|  434|Caenorhabditis elegans Hypothetical p...    89   4e-18
Z92838-10|CAB07412.2|  312|Caenorhabditis elegans Hypothetical p...    48   1e-05
Z92832-9|CAB07377.2|  312|Caenorhabditis elegans Hypothetical pr...    48   1e-05
U39999-1|AAK93855.1|  277|Caenorhabditis elegans Hypothetical pr...    37   0.023
Z73422-8|CAA97771.3|  240|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AC024859-6|AAK29982.1|  195|Caenorhabditis elegans Hypothetical ...    30   2.7  
AL110485-20|CAB60368.2|  600|Caenorhabditis elegans Hypothetical...    29   4.6  
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr...    29   8.1  

>U00033-15|AAC48298.2|  434|Caenorhabditis elegans Hypothetical
           protein F37C12.13a protein.
          Length = 434

 Score = 89.4 bits (212), Expect = 4e-18
 Identities = 58/219 (26%), Positives = 110/219 (50%), Gaps = 1/219 (0%)
 Frame = +3

Query: 207 ISIKTRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTIVVCGIKLELAVPKAEEPDLG 386
           + I  R D R+ +E R++KL V +      +A+   GNT V+  +  E+A P +  P  G
Sbjct: 18  LKIGKRFDFRSLEEFRDVKLVVGA---EVGTAICTIGNTKVMAAVSAEIAEPSSMRPHKG 74

Query: 387 FLITNVELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLKDLCIVPDKLAWVVYC 566
            +  +V+L  + +              +  ++  II++S+CID++ LCI   K  W +  
Sbjct: 75  VINIDVDLSPMANYANEHDRLGSKGMELIRLLELIIRDSRCIDVEALCIRAGKEIWKIRV 134

Query: 567 DMVCIDHDGSLVDACIIALIASFKTLLLPSVNYDTETEEIKVETNER-INLKIHGLPVAT 743
           D+  +D DGSL+D   +A I + +    P+V  +     I  E  +  + L I+ +P+ T
Sbjct: 135 DVRILDEDGSLLDCACLAAITALQHFRRPNVTLEPHHTLIYSEYEKAPVPLNIYHMPICT 194

Query: 744 SFAVYEHFQSQIILLTDPTNYEEEMCGGNGSNLIISYNK 860
           +  + +  + QI+++ DPT+ E     G   +++++ NK
Sbjct: 195 TIGLLD--KGQIVVI-DPTDKETACLDG---SIVVACNK 227


>Z92838-10|CAB07412.2|  312|Caenorhabditis elegans Hypothetical
           protein F31D4.1 protein.
          Length = 312

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 7/151 (4%)
 Frame = +3

Query: 222 RLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTI-VVCGIKLELAVPKAE---EPDLGF 389
           R DGR+  + R I L    +   + S  V+ G T  V+ GIKLEL    AE   EP    
Sbjct: 22  RNDGRSCQDFRQIILERGVLSGTNGSCRVQLGQTTDVLAGIKLELESYDAETEKEPKQPI 81

Query: 390 LITNVELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLKDLCI---VPDKLAWVV 560
              NV+  A  SS++      +YA+ ++         SK +D+        + D   W +
Sbjct: 82  NF-NVDFSANASSQFAGKGGDEYAEELSAAFQAAY--SKALDIMPNLAKTQLADGYRWKI 138

Query: 561 YCDMVCIDHDGSLVDACIIALIASFKTLLLP 653
             D+  +  DGS+ DA  IA+I +   L  P
Sbjct: 139 NVDISVLQWDGSVSDAISIAIIGALSDLEFP 169


>Z92832-9|CAB07377.2|  312|Caenorhabditis elegans Hypothetical
           protein F31D4.1 protein.
          Length = 312

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 7/151 (4%)
 Frame = +3

Query: 222 RLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTI-VVCGIKLELAVPKAE---EPDLGF 389
           R DGR+  + R I L    +   + S  V+ G T  V+ GIKLEL    AE   EP    
Sbjct: 22  RNDGRSCQDFRQIILERGVLSGTNGSCRVQLGQTTDVLAGIKLELESYDAETEKEPKQPI 81

Query: 390 LITNVELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLKDLCI---VPDKLAWVV 560
              NV+  A  SS++      +YA+ ++         SK +D+        + D   W +
Sbjct: 82  NF-NVDFSANASSQFAGKGGDEYAEELSAAFQAAY--SKALDIMPNLAKTQLADGYRWKI 138

Query: 561 YCDMVCIDHDGSLVDACIIALIASFKTLLLP 653
             D+  +  DGS+ DA  IA+I +   L  P
Sbjct: 139 NVDISVLQWDGSVSDAISIAIIGALSDLEFP 169


>U39999-1|AAK93855.1|  277|Caenorhabditis elegans Hypothetical
           protein F41G3.14 protein.
          Length = 277

 Score = 37.1 bits (82), Expect = 0.023
 Identities = 42/183 (22%), Positives = 75/183 (40%), Gaps = 1/183 (0%)
 Frame = +3

Query: 159 SEVYKLIHPVKHFNDYISIKTRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTIVVCG 338
           SEV + I P  +F  +I      DGR   + + +           +S V   G T V C 
Sbjct: 3   SEVLRGIDPRGYFATFIKEGVYPDGRGLLDEQKLVFKQGECGGVGSSVVSTQGVT-VSCS 61

Query: 339 IKLELAVPKAEEPDLGFLITNVELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDL 518
           I+  +++      D   +   +E     S K      S    +  N      +N +C+D+
Sbjct: 62  IQASVSLVS----DAPLVDIKIEGSQQLSEKDAEDCNSVLLSLFTNNCFVRRENLRCLDV 117

Query: 519 KDLCIVPDKLAWVVYCDMVCIDHDGSLVDACIIALIASFKTLLLPSVNYD-TETEEIKVE 695
              C  P  L W ++  +  +  +G+ +DA + AL A+     LPS+  + +E +E  +E
Sbjct: 118 ---CGKPLPLEWQLHIIVKVLSLEGNFLDAAVCALGAALVDAKLPSIVLNHSEGDESTIE 174

Query: 696 TNE 704
             +
Sbjct: 175 KTQ 177


>Z73422-8|CAA97771.3|  240|Caenorhabditis elegans Hypothetical
           protein B0564.1a protein.
          Length = 240

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 222 RLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTIVVCGI 341
           R+DGR   + RNI   +   + A+ S  ++ GNT V+C +
Sbjct: 10  RIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAV 49


>AC024859-6|AAK29982.1|  195|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.12 protein.
          Length = 195

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 28/100 (28%), Positives = 42/100 (42%)
 Frame = +3

Query: 510 IDLKDLCIVPDKLAWVVYCDMVCIDHDGSLVDACIIALIASFKTLLLPSVNYDTETEEIK 689
           IDL D   V   + W    D    D   +++      L++  ++  L ++  +T  E I+
Sbjct: 87  IDLSDENCVEHLIRWKGIIDKNKSDFTSTIIVGNKHDLVSEKRSPRLTAIIRETNDEYIE 146

Query: 690 VETNERINLKIHGLPVATSFAVYEHFQSQIILLTDPTNYE 809
                R N+K     VA      EH  SQIILL +P   E
Sbjct: 147 TSAKMRKNIKKLFSSVACR-PFPEHETSQIILLNEPRPVE 185


>AL110485-20|CAB60368.2|  600|Caenorhabditis elegans Hypothetical
           protein Y46G5A.25 protein.
          Length = 600

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
 Frame = -2

Query: 478 ILFITCA*SEGGPGLYLE----EHKAGSSTFVIKKPKSGSSAFGTANSSFIPHTTIVLPH 311
           I +ITCA   G PG+YLE    +++  S  FV ++       FG   +++I   +  L  
Sbjct: 137 IPYITCALLFGLPGVYLEFAMGQYQGRSPPFVYRRIMPALEGFGWVAANYIVKPSKGLLD 196

Query: 310 LTTADASAVFMELTFNFMFRCSSKFLPSSLVLI 212
           + + +   +F+ ++F       +  LP  L+++
Sbjct: 197 INSIN-WPIFIAMSFIRKISYVTVILPYILIIV 228


>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical protein
            F07A11.4 protein.
          Length = 1095

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +3

Query: 201  DYISIKTRLDGRNFDEHRNIKLNVNSIKTADA 296
            D+ S KT+++ RNFD+    + + ++++T DA
Sbjct: 1031 DFDSSKTKIEWRNFDDSTVARQSTSTLQTEDA 1062


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,907,608
Number of Sequences: 27780
Number of extensions: 412431
Number of successful extensions: 949
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3099034026
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)