Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_B11
         (1197 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane synthase|Schiz...    29   0.97 
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    29   1.3  
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    29   1.7  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   6.8  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    26   9.0  

>SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 29.5 bits (63), Expect = 0.97
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = +1

Query: 757 IGA*GIRSLWEKNDATLTTDKEETERGATVTIALLK 864
           + A G+R+ +   +A +++++E  E G TV +ALLK
Sbjct: 278 LSADGLRAAFGNAEAVVSSEEEAEELGITVALALLK 313


>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = +3

Query: 438 VKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDSV--IGMPTCSIEQAEA 611
           +K+T+ H T   ++  V   EHNL   ++Q+   +    D  +    +G    ++ +A+ 
Sbjct: 134 LKVTNNHITHATIVGQVSGSEHNLSTAIEQVDVIVNYFYDSSEKFLELGNKVQTLGKAKN 193

Query: 612 VRQYYAAFPALKKGQVSPLQYYL 680
            + +   + +  K  V  +Q  L
Sbjct: 194 KKHWLGVYQSFGKASVDQIQKQL 216


>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 526

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +3

Query: 873  SLPEWVTYEGVWDMETQDPVKSL-XVP*LLMRDMALVKTPSLMTSATQXL 1019
            +LP W+T E V  +   DP  ++  VP L + D+ L+ +   +T+A+  L
Sbjct: 387  TLPYWITVELVGKVREIDPSPNINIVPPLQLADIVLLVSKKKLTAASAKL 436


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +3

Query: 465  LHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDSVIGMPTCSIEQA 605
            L+ LI  + I +HN  N    L  ++ + K H   ++G+    +++A
Sbjct: 2380 LYSLIRLIFISQHNGKNPYYDLIVNISENKQHRADIVGLLLYILQEA 2426


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 10/16 (62%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
 Frame = +3

Query: 843 GHNR-SFESKDSLPEW 887
           G+NR SF+SK+ LP+W
Sbjct: 647 GYNRWSFQSKEGLPDW 662


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,373,940
Number of Sequences: 5004
Number of extensions: 87905
Number of successful extensions: 207
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 645466968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)