Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_B11
         (1197 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1054 + 34133087-34133417,34133546-34133862,34133988-34134158     32   1.0  
09_02_0254 - 6334767-6335465                                           29   5.5  
09_02_0097 - 4232707-4232991,4233672-4233913,4234253-4234427           29   5.5  
06_01_0135 + 1039018-1041474                                           29   5.5  
05_01_0231 - 1730428-1730817                                           29   7.2  

>01_06_1054 + 34133087-34133417,34133546-34133862,34133988-34134158
          Length = 272

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 636 PALKKGQVSPLQYYLPPPAWCRKTVTEVTAKMQCELSPSKDW 761
           PAL+ G V P ++ L PP W +  V  + +   C+   ++ W
Sbjct: 106 PALRAGNVQPYEFIL-PPTWKQTRVANILSGNYCQPKCAEPW 146


>09_02_0254 - 6334767-6335465
          Length = 232

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +3

Query: 786 GKERRNSYHGQRRNRKRSNGHNRSFESKDSLPEWVTYEGVWDMETQDPVKSLXV 947
           G+ R +   G+RR R+R    +  +      P W    G W  E +DPVK + V
Sbjct: 90  GRRRADDDDGERRRRRRREKRSYPYRGIRQRP-W----GRWASEIRDPVKGIRV 138


>09_02_0097 - 4232707-4232991,4233672-4233913,4234253-4234427
          Length = 233

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 675 YLPPPAWCRKTV-TEVTAKMQCELSPSKDWSLRNKKFVGKERRNSYH 812
           Y P   +C     T++      EL P+    +R + F G+ER NSYH
Sbjct: 10  YAPRAEFCEAPFSTKLIRSSGYELHPNIIAIVREQPFSGRERENSYH 56


>06_01_0135 + 1039018-1041474
          Length = 818

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -1

Query: 378 DSVCRYQTPSSHINLVSPFYYRRGPCV*IDPLFVLRY*YMLISLACCLLV 229
           D+V  ++  +S IN +S +Y+   P V   P F +   ++L  +  C+ V
Sbjct: 329 DAVAVFEVMNSEINFLSEYYHSVVPVVLASPFFFVANYFLLPVVVLCVCV 378


>05_01_0231 - 1730428-1730817
          Length = 129

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 414 GDSLRACHVKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTSLQDIKD 557
           GD  R C  K+   +  LH L+  V   +H  G I+ +  +SLQ+I D
Sbjct: 80  GDRNRLCGEKLKKRY--LHELLRDVEPDDHKHGGILQRCKSSLQEIVD 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,105,999
Number of Sequences: 37544
Number of extensions: 586669
Number of successful extensions: 1409
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1408
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3654850728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)