Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_B11
         (1197 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK097432-1|BAC05050.1|  466|Homo sapiens protein ( Homo sapiens ...    31   6.3  
BC112343-1|AAI12344.1|  508|Homo sapiens SFRS12 protein protein.       31   8.3  
BC067770-1|AAH67770.1|  508|Homo sapiens splicing factor, argini...    31   8.3  
AF459094-1|AAL67778.1|  508|Homo sapiens splicing factor, argini...    31   8.3  

>AK097432-1|BAC05050.1|  466|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40113 fis, clone TESTI2008621. ).
          Length = 466

 Score = 31.5 bits (68), Expect = 6.3
 Identities = 18/72 (25%), Positives = 32/72 (44%)
 Frame = +3

Query: 405 REQGDSLRACHVKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDSVIGMP 584
           REQ + LR    ++      L      +C QE  L    ++LC   + +++HE+ +    
Sbjct: 209 REQEERLREQEERLHEQEERLCEQEERLCEQEERLREHEERLCEQEERLREHEERLCEQE 268

Query: 585 TCSIEQAEAVRQ 620
               EQ E +R+
Sbjct: 269 ERLCEQEERLRE 280


>BC112343-1|AAI12344.1|  508|Homo sapiens SFRS12 protein protein.
          Length = 508

 Score = 31.1 bits (67), Expect = 8.3
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +3

Query: 699 RKTVTEVTAKMQCELSPSKDWSLRNKKFVGKERRNSYHGQRRNRKRSNGHNRSFESKD 872
           R   T  T K +   SPS     RNKK   +E+   +  +RR R+RS    +S   +D
Sbjct: 391 RSPRTSKTIKRKSSRSPSP--RSRNKKDKKREKERDHISERRERERSTSMRKSSNDRD 446


>BC067770-1|AAH67770.1|  508|Homo sapiens splicing factor,
           arginine/serine-rich 12 protein.
          Length = 508

 Score = 31.1 bits (67), Expect = 8.3
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +3

Query: 699 RKTVTEVTAKMQCELSPSKDWSLRNKKFVGKERRNSYHGQRRNRKRSNGHNRSFESKD 872
           R   T  T K +   SPS     RNKK   +E+   +  +RR R+RS    +S   +D
Sbjct: 391 RSPRTSKTIKRKSSRSPSP--RSRNKKDKKREKERDHISERRERERSTSMRKSSNDRD 446


>AF459094-1|AAL67778.1|  508|Homo sapiens splicing factor,
           arginine/serine-rich 12 protein.
          Length = 508

 Score = 31.1 bits (67), Expect = 8.3
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +3

Query: 699 RKTVTEVTAKMQCELSPSKDWSLRNKKFVGKERRNSYHGQRRNRKRSNGHNRSFESKD 872
           R   T  T K +   SPS     RNKK   +E+   +  +RR R+RS    +S   +D
Sbjct: 391 RSPRTSKTIKRKSSRSPSP--RSRNKKDKKREKERDHISERRERERSTSMRKSSNDRD 446


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,770,575
Number of Sequences: 237096
Number of extensions: 3279235
Number of successful extensions: 6900
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6899
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 16844146380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)