Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_B11
         (1197 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.57 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.57 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    26   0.75 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    25   1.00 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    25   1.00 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    25   1.00 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    24   2.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   2.3  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   5.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 0.57
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 602 SRGCTSILRCISSS 643
           SRGCT++LRC+  S
Sbjct: 143 SRGCTAVLRCVVPS 156


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.2 bits (55), Expect = 0.57
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 602 SRGCTSILRCISSS 643
           SRGCT++LRC+  S
Sbjct: 143 SRGCTAVLRCVVPS 156


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.8 bits (54), Expect = 0.75
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = +3

Query: 660 SPLQYYLPPPAWCRKTVTEVTAK---MQCELSPSK--DWSLRNKKFVGKERRNSYHGQRR 824
           SP  + + P  W R+    V  +   M+   +PSK  D+  R +  + K    S+HGQR 
Sbjct: 331 SPQTHVMAP--WVRRVFIHVLPRLLVMRRYNTPSKRSDYDSRPQYQIDKRSMGSHHGQRV 388

Query: 825 NRKRSNG 845
             +  NG
Sbjct: 389 MVRTCNG 395


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 1.00
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 817 KEETERGATVTIALLKVRTA 876
           K E ERG T+ IAL K  TA
Sbjct: 64  KAERERGITIDIALWKFETA 83


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 1.00
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 326 HFTIAVGRVYKSILCLSFVTNTCLYLW 246
           HF I +  +Y  +L +S V N C+ +W
Sbjct: 55  HFHIGLAIIYSMLLIMSLVGNCCV-IW 80


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 1.00
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 326 HFTIAVGRVYKSILCLSFVTNTCLYLW 246
           HF I +  +Y  +L +S V N C+ +W
Sbjct: 55  HFHIGLAIIYSMLLIMSLVGNCCV-IW 80


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 817 KEETERGATVTIALLKVRTA 876
           K E ERG T+ IAL K  T+
Sbjct: 7   KAERERGITIDIALWKFETS 26


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 817 KEETERGATVTIALLKVRTA 876
           K E ERG T+ IAL K  T+
Sbjct: 64  KAERERGITIDIALWKFETS 83


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 771 NKKFVGKERRNSYHGQRRNRKRSNGHNRSFESKDS 875
           N++   ++  N  +G R+N  + NG NR  ++K +
Sbjct: 458 NRQNDNRQNDNKQNGNRQNDNKQNG-NRQNDNKQN 491



 Score = 23.0 bits (47), Expect = 5.3
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 771 NKKFVGKERRNSYHGQRRNRKRSNGHNRS 857
           NK+   ++  N  +G R+N  + NG+ ++
Sbjct: 468 NKQNGNRQNDNKQNGNRQNDNKQNGNRQN 496



 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 771 NKKFVGKERRNSYHGQRRNRKRSNGHNRS 857
           N++   K+  N  +G R+N  + NG+ ++
Sbjct: 493 NRQNGNKQNDNKQNGNRQNDNKRNGNRQN 521


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 298,517
Number of Sequences: 438
Number of extensions: 6244
Number of successful extensions: 24
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40849839
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)