Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_B09
(1177 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 34 0.044
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo... 32 0.13
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 30 0.54
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 29 1.7
SPAC1B3.07c |vps28||ESCRT I complex subunit Vps28|Schizosaccharo... 28 2.2
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 2.2
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 28 2.9
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 27 3.8
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce... 27 3.8
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 27 5.0
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 26 8.8
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 26 8.8
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 33.9 bits (74), Expect = 0.044
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
Frame = +3
Query: 441 RTPTRKS--PSRKTPTNFSARKSPARAPKEVKPTAEVAPEVVRQSPSKRPALKSNLSVKL 614
R TRKS PS T+ RKS A AP + P++ AP + + S +S K
Sbjct: 153 RNATRKSKKPSASKDTSRGVRKSKAGAPSD--PSSVHAPSSLEKPAGTGDLPSSEISTKA 210
Query: 615 EDLTANFESLRNARNRRIDYTLRDVTSTNSQI-IIESVNGVESKN 746
T S+ + D +++D T++N Q ++ S N S N
Sbjct: 211 PASTTVSSSV-DPGTINEDSSMKDHTTSNEQASVLTSANTAASTN 254
>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 32.3 bits (70), Expect = 0.13
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +3
Query: 540 EVAPEVVRQS-PSKRPALKSNLSVKLEDLTANFESLRNARNRRIDYTLRDVTSTNSQIII 716
EVA + ++ + KR L+ L KL L + S +A N I+ L ++ + ++++
Sbjct: 106 EVANDCIKWAIKEKRTFLRQALETKLISLYYDNSSYTDAINL-INTLLSELKRMDDKMLL 164
Query: 717 ESVNGVESKNYHNLRN 764
V+ +ESK YH +RN
Sbjct: 165 TEVHLLESKVYHAIRN 180
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 30.3 bits (65), Expect = 0.54
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +3
Query: 591 KSNLSVKLEDLTANFESLRNARNRRIDYTLRDVTSTNSQIIIESVNGVESK 743
K+ L+ L+D A+ E L NAR R TLR S S++ + SK
Sbjct: 13 KAILATPLDDDEADKEKLANARGRASSATLRHYNRRRSSYSASSLSSLSSK 63
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 28.7 bits (61), Expect = 1.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 729 GVESKNYHNLRNRRSVEELPPRRSSRL 809
G+E+K ++N R +R +E +PP S L
Sbjct: 356 GIEAKKFNNERKKRELEVIPPDVKSAL 382
>SPAC1B3.07c |vps28||ESCRT I complex subunit
Vps28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 28.3 bits (60), Expect = 2.2
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Frame = +3
Query: 435 NQRTPTRKSPSRKTPTNFSAR--KSPARAPKEVKPTAEVAPEVVRQSPSKRPALKSNLSV 608
N TP +P+ K P+N SA KS A + T + P L S L V
Sbjct: 133 NDTTPQTVNPT-KAPSNPSASIAKSIAGLVQNFITTLDAIRLNFIAKDQLHPLL-SELIV 190
Query: 609 KLEDLTANFESLRNARNRRIDYTLRDVTSTNSQIIIESVNGVESK 743
++DLT + + + RN+ + + ++ N+ I + +N VE +
Sbjct: 191 SMDDLTESLKIQVSCRNKLVQWLIK----INNMNITDQLNDVEKR 231
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 28.3 bits (60), Expect = 2.2
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Frame = +3
Query: 474 TPTNFSARKSPARAPKEVKPTAEVAPEVVRQSP-SKRPALKSNLSVKLEDLTANFESLRN 650
+P +FSA KSPA K E V +Q+P + ++ S ++ +AN +
Sbjct: 322 SPLSFSASKSPAAVDSSTKTPTEQVNVVSKQAPTTSSTSVISPDPLQTAAPSANVNEVIA 381
Query: 651 ARNRRIDYTLRDVTSTNSQIIIESVNGVE 737
+ ++ T R + N ++ + +V+G E
Sbjct: 382 SLESKV-VTRRTGSGNNYRVGLRNVSGSE 409
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 27.9 bits (59), Expect = 2.9
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +3
Query: 405 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEVAPEVVRQSPSKRP 584
SP H + PN R + S+ P S R S K+ + RQS +
Sbjct: 73 SPHHASNPHPNSRQKHQHQTSKSVPR--SQRFSRELNVKKENKKVFSSQTTKRQSRKQST 130
Query: 585 ALKSN-LSVKLED-LTANFESLRNARN 659
AL +N S+ L+D L N + L RN
Sbjct: 131 ALTTNDTSIILDDSLHTNSKKLGKTRN 157
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 27.5 bits (58), Expect = 3.8
Identities = 31/113 (27%), Positives = 43/113 (38%)
Frame = +3
Query: 417 PAKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEVAPEVVRQSPSKRPALKS 596
P + P PT P + +P S R P R EV+P + Q + L+
Sbjct: 320 PIEVKPAAPVPTPAPPVKTSPHPASYRPQPTR-NVEVRPLLMLDDVQSAQITQFQIRLQQ 378
Query: 597 NLSVKLEDLTANFESLRNARNRRIDYTLRDVTSTNSQIIIESVNGVESKNYHN 755
L+ K E L N+ L + I D N II +G E+K HN
Sbjct: 379 RLT-KKEQLDRNWVDLLETPSTVIHTNYPDSFYRN---IIPYYSGKETKQSHN 427
>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 292
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +3
Query: 462 PSRKTPTNFSARKSPARAPKEVKPTAEVAPEVVRQSPSKRPALKSNLSVK 611
P ++TP NF RK + +++ ++V + KRP + +++ K
Sbjct: 92 PKKQTPQNFLTRKEEVKESQKIDLYSDVRDQQTDLPLEKRPWINTDIVCK 141
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 27.1 bits (57), Expect = 5.0
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 3/119 (2%)
Frame = +3
Query: 420 AKKSPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVKPTAEVAPEVVRQSPSKRPALKSN 599
A NQ+ + S PT+FSA SP R+ + + A S P+
Sbjct: 957 ADSKMNQQLSGKDSTDVHLPTDFSASSSPLRSYFNEEDSFNNASAAHSSKESDIPS--GG 1014
Query: 600 LSVKLEDLTANF---ESLRNARNRRIDYTLRDVTSTNSQIIIESVNGVESKNYHNLRNR 767
+ K + N E + N + L DV NSQ S++ SK+Y+++R++
Sbjct: 1015 VFTKYRNHFGNLMTSEETKAPDNNDLHKRLSDV--INSQQKFLSLSPQVSKDYYDVRSK 1071
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 26.2 bits (55), Expect = 8.8
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 388 GEFFRLLAGERDGETLFLVCTGLVSRTLNLILPLRVD 278
G F R+ GERDG+ ++ +C V L P RVD
Sbjct: 245 GCFVRVKIGERDGQGVYRLCQ--VKGILESRKPYRVD 279
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 26.2 bits (55), Expect = 8.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 429 SPNQRTPTRKSPSRKTPTNFSARKSPARAPKEVK 530
SP TPT+ SP K+P + A S + K
Sbjct: 14 SPAMETPTKASPDSKSPNSVGAIPSSSPLASSTK 47
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,808,421
Number of Sequences: 5004
Number of extensions: 70654
Number of successful extensions: 238
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 631521694
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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