Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_B07
         (1196 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.          130   3e-32
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   3.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   3.0  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   7.0  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score =  130 bits (313), Expect = 3e-32
 Identities = 65/80 (81%), Positives = 69/80 (86%)
 Frame = +3

Query: 171 AKRHRQVLRXHIQGITQPALRRLARXGGVKRISGLIYAAPRGVLKVFLENVIRXAVTYTE 350
           AKRHR+VL  +IQGIT+PA+RRLAR GGVKRISGLIY   RGVLKVFLENVIR AVTYTE
Sbjct: 16  AKRHRKVLGDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTE 75

Query: 351 HAKXKXVTAMDVVYALKRQG 410
           H K K VTAMDVVYALK QG
Sbjct: 76  HTKRKTVTAMDVVYALKIQG 95


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -1

Query: 398 QSVHNIHSGDGLPLGVFGVCDSXADHV--FEEHFENAAGRCVYKTGDT 261
           Q +H++H+     + +  V DS  +HV  + +   N  G  V   GD+
Sbjct: 324 QMIHDLHTRISTAIDLGYVVDSYGNHVKLYTKQGLNVLGNIVQGNGDS 371


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -1

Query: 398 QSVHNIHSGDGLPLGVFGVCDSXADHV--FEEHFENAAGRCVYKTGDT 261
           Q +H++H+     + +  V DS  +HV  + +   N  G  V   GD+
Sbjct: 324 QMIHDLHTRISTAIDLGYVVDSYGNHVKLYTKQGLNVLGNIVQGNGDS 371


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 392 VHNIHSGDGLPLGVFG 345
           VHN+H   G+  G+FG
Sbjct: 331 VHNLHGMPGILGGIFG 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,085
Number of Sequences: 438
Number of extensions: 2819
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40849839
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)