Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_B06
(1159 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 46 8e-06
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 43 9e-05
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 42 1e-04
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 42 2e-04
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 38 0.003
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 33 0.057
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 31 0.40
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 30 0.70
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 29 1.2
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 27 3.7
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 27 6.5
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar... 27 6.5
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 26 8.7
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 26 8.7
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 26 8.7
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 26 8.7
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 26 8.7
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 46.4 bits (105), Expect = 8e-06
Identities = 35/143 (24%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Frame = +1
Query: 484 TTRDGLHRATCSNLA---ELYKFTLRQKHHNINILDLSHNNITKLNHELDRLTEVVTLDL 654
TT + + T S++A + K +++ + LDL + ++ +L + + + L +
Sbjct: 129 TTLNSTSKTTTSSVAVDDQKSKSDSKKERRDWTCLDLGGIGLRNVSTDLFKFSFLTELYI 188
Query: 655 STNGIQNLNKFLHNAKKLVHLNLANNRIKELAMS-HLPASVSSLDLTNNLLRDVPSDLGH 831
+ N + L + K LV L+ + N IK + L + + L +N++ +P++LG
Sbjct: 189 NHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPELGLLTELREVLLFDNMISVIPAELGT 248
Query: 832 LTSLEHLELEGNPLDCSCENILL 900
L L+ L +EGNPL +N ++
Sbjct: 249 LFQLKILGIEGNPLQDVYKNQIM 271
Score = 27.1 bits (57), Expect = 5.0
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = +1
Query: 556 KHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNR 735
K N+ ILD S N+I + EL LTE+ + L N I + L +L L + N
Sbjct: 202 KLKNLVILDASGNSIKTIPPELGLLTELREVLLFDNMISVIPAELGTLFQLKILGIEGNP 261
Query: 736 IKELAMSHLPAS 771
++++ + + S
Sbjct: 262 LQDVYKNQIMES 273
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 42.7 bits (96), Expect = 9e-05
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Frame = +1
Query: 553 QKHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANN 732
++ N+ L L N I K+ + LTE LDL N I + L N K L +L+L+ N
Sbjct: 59 ERFKNLQSLCLRQNQIKKIESVPETLTE---LDLYDNLIVRIEN-LDNVKNLTYLDLSFN 114
Query: 733 RIKELA-MSHLPASVSSLDLTNNLLRDVPSDLGHLTSLEHLELEGNPL 873
IK + ++HL + +L N +R + +L L L +LEL GN +
Sbjct: 115 NIKTIRNINHL-KGLENLFFVQNRIRRI-ENLEGLDRLTNLELGGNKI 160
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 42.3 bits (95), Expect = 1e-04
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = +1
Query: 577 LDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLH-NAKKLVHLNLANNRIKELAM 753
LDLS N +T++ + L L ++ +L+L++N I F H + L L L+ N + L+
Sbjct: 361 LDLSGNELTEIPYALGELPQLCSLNLASNKITGCRTFYHISLSHLQILVLSRNHLTSLSG 420
Query: 754 SHLPASVSSLDLTNNLLRDV 813
S+ LD+ +N + DV
Sbjct: 421 LENVPSLEKLDIRDNSITDV 440
Score = 35.1 bits (77), Expect = 0.019
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = +1
Query: 628 LTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIKEL-AMSHLPAS-VSSLDLTNNL 801
L +V+LDLS N + + L +L LNLA+N+I H+ S + L L+ N
Sbjct: 355 LQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKITGCRTFYHISLSHLQILVLSRNH 414
Query: 802 LRDVPSDLGHLTSLEHLELEGNPL 873
L + S L ++ SLE L++ N +
Sbjct: 415 LTSL-SGLENVPSLEKLDIRDNSI 437
Score = 29.9 bits (64), Expect = 0.70
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +1
Query: 703 KLVHLNLANNRIKELAMSHLPA--SVSSLDLTNNLLRDVPSDLGHLTSLEHLELEGNPL 873
+L++L ++ ++K + + + S+ SLDL+ N L ++P LG L L L L N +
Sbjct: 333 QLLYLRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKI 391
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 41.5 bits (93), Expect = 2e-04
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Frame = +1
Query: 565 NINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIKE 744
N+ LD+S+N + L L L + L + +N + +L+ H L+ L+ NNRIKE
Sbjct: 669 NLQYLDISYNQLEDLTG-LSSLIHLRELKVDSNHLWSLDGIQH-LDGLLKLSACNNRIKE 726
Query: 745 LAMSHLPA-SVSSLDLTNNLLRDVPSDLGHLTSLEHLELEGNPL 873
L+ ++ + L L NN + ++ ++ L +L L+L+ N L
Sbjct: 727 LSFTNSNLHRLEELLLGNNEIEEI-EEISSLQNLMVLQLDNNKL 769
Score = 33.1 bits (72), Expect = 0.075
Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 5/131 (3%)
Frame = +1
Query: 616 ELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIKELAMSHLPASVSSLDLTN 795
++ RL +V T + N + + + +L L+NN L H+ V L+L N
Sbjct: 817 DIRRLKRLVNFSFRTQDPEASNFVIQPSLDIRNLYLSNNTFVTLDCKHMFLGVRYLELAN 876
Query: 796 NLLRDVPSDLG-HLTSLEHLELEGNPLDC--SCENILLRDRLIIANVVIDNVK--CSLPT 960
L++VP + + +L L+L N + S + + + RL + I ++ C +
Sbjct: 877 VQLKEVPKYIATSMPNLRVLDLSHNYISDIESLKPLQMIHRLYLVGNRIKKMRNLCDILA 936
Query: 961 KLKGQSWLELK 993
LK + L+L+
Sbjct: 937 NLKQLNVLDLR 947
Score = 30.7 bits (66), Expect = 0.40
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Frame = +1
Query: 577 LDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIKELAMS 756
L +N I +L+ L + L L N I+ + + + + + L+ L L NN++ L S
Sbjct: 717 LSACNNRIKELSFTNSNLHRLEELLLGNNEIEEIEE-ISSLQNLMVLQLDNNKLTNLKAS 775
Query: 757 HLPASVSSLDLTNNLLRDVPSD-LGHLTSL 843
+ L ++NN + + D HL +L
Sbjct: 776 QPMIHLRILRISNNAIHQLEVDQFPHLRTL 805
Score = 29.9 bits (64), Expect = 0.70
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +1
Query: 565 NINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIKE 744
N+ +LDLSHN I+ + L L + L L N I+ + L LN+ + R+
Sbjct: 892 NLRVLDLSHNYISDI-ESLKPLQMIHRLYLVGNRIKKMRNLCDILANLKQLNVLDLRMNP 950
Query: 745 LAMSHLPASVSSL 783
L + P S+
Sbjct: 951 LNFNIYPVIDDSI 963
Score = 26.6 bits (56), Expect = 6.5
Identities = 21/77 (27%), Positives = 36/77 (46%)
Frame = +1
Query: 715 LNLANNRIKELAMSHLPASVSSLDLTNNLLRDVPSDLGHLTSLEHLELEGNPLDCSCENI 894
LN NR+ L ++ LD++ N L D+ + L L L L+++ N L S + I
Sbjct: 651 LNAVENRLSSLTSFSNLLNLQYLDISYNQLEDL-TGLSSLIHLRELKVDSNHL-WSLDGI 708
Query: 895 LLRDRLIIANVVIDNVK 945
D L+ + + +K
Sbjct: 709 QHLDGLLKLSACNNRIK 725
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 37.9 bits (84), Expect = 0.003
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Frame = +1
Query: 562 HNINILDLSHNNITKLNHE-LDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRI 738
H + L++SHN L + ++R ++ LD+S N K + ++L LN++ N I
Sbjct: 429 HELISLNVSHNLSLDLPLDFMERCVKLKRLDISNNLRSPRGKPITALRQLEVLNMSRNDI 488
Query: 739 KE---LAMSHLPA-SVSSLDLTNNLLRDVPSDLGHLTSLEHLELEGN 867
E L S L S+ L++ NN L +P +L +L +L+L N
Sbjct: 489 YELDPLIFSGLSRNSLKELNIANNKLFFLPHSTRYLVNLTYLDLSYN 535
Score = 37.5 bits (83), Expect = 0.004
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Frame = +1
Query: 565 NINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIKE 744
N+ LDLS+NN + L+++ TL+ S N + ++ + + KL HL L N +
Sbjct: 526 NLTYLDLSYNNFVTFPLIITELSQLETLNFSHNLLSQISSKIGSLVKLKHLYLQFNDLSN 585
Query: 745 LAMSH--LPASVSSLDLTNNLLRDVPS 819
L ++ ++DL+ N + ++ S
Sbjct: 586 RLPQEIGLLKNLETIDLSYNAITNIAS 612
Score = 35.9 bits (79), Expect = 0.011
Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 12/114 (10%)
Frame = +1
Query: 568 INILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNK------FL-HNAKKLVHLNLA 726
+ +L++S N+I +ELD L + LS N ++ LN FL H+ + LV+L
Sbjct: 478 LEVLNMSRNDI----YELDPL---IFSGLSRNSLKELNIANNKLFFLPHSTRYLVNLTYL 530
Query: 727 ----NNRIK-ELAMSHLPASVSSLDLTNNLLRDVPSDLGHLTSLEHLELEGNPL 873
NN + L ++ L + + +L+ ++NLL + S +G L L+HL L+ N L
Sbjct: 531 DLSYNNFVTFPLIITEL-SQLETLNFSHNLLSQISSKIGSLVKLKHLYLQFNDL 583
Score = 27.5 bits (58), Expect = 3.7
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Frame = +1
Query: 511 TCSNLAELYKFTLRQKHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFL 690
+C+N Y K ++ LDL NNI E+ +++ + ++LS+N ++ + +
Sbjct: 712 SCTNCEMSYVSPNLGKLKHLVHLDLHANNIKIFPEEVWQVSSLKVVNLSSNILEKIKLPV 771
Query: 691 HNAKKLVHLNLANNRIKELAMSHLPASVSSLDLTNNLLRD---VPSDLGH--LTSLEHLE 855
+KKL ++ +I + +S+SS + + + V + LG+ T+LE+ +
Sbjct: 772 ATSKKLTR-TISQLKIMRTLSGNPVSSLSSQEFVMPTVEELYLVDNRLGNDCFTALEYFK 830
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 33.5 bits (73), Expect = 0.057
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +1
Query: 556 KHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNR 735
K + L++ N + + L RL + LD+S N I+ L + L L+++ NR
Sbjct: 73 KFTRLRYLNIRSNVLREFPESLCRLESLEILDISRNKIKQLPESFGALMNLKVLSISKNR 132
Query: 736 IKELA--MSHLPASVSSLDLTNN 798
+ EL ++H+P ++ L + NN
Sbjct: 133 LFELPTYIAHMP-NLEILKIENN 154
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 30.7 bits (66), Expect = 0.40
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Frame = +1
Query: 505 RATCSNLAELYKFTLRQKHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNK 684
RA+ SN E K + + N +L ++ + + + LTE S NG+Q+L +
Sbjct: 302 RASFSNFMENEKKLYEKVNTNRTLLRNANLTLNEAQQSVKSLTERQGPRPSDNGVQDLQE 361
Query: 685 FLH--NAKKLVHLNLANNRIKELAMSHLPASVSSLDLTN 795
+ NA+KL H N EL + +DL N
Sbjct: 362 KMQEVNAEKLQHENEKLESSHELGSIRTLKAQKLIDLDN 400
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 29.9 bits (64), Expect = 0.70
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Frame = +1
Query: 634 EVVTLDLSTNGIQNLNKFLHNAK---KLVHLNLANNRIKELA 750
+V+++ LS N +Q++ A+ KL++L+LANNRI L+
Sbjct: 215 DVISVSLSDNNLQSVTAVTTLAQTWPKLLNLSLANNRITSLS 256
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 29.1 bits (62), Expect = 1.2
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Frame = +1
Query: 655 STNGIQNLNKFLHNAKKLVHLNLANNRIKELAMSHLPASVSSLDLTNNLLRDVPSDLGHL 834
ST+ +Q + N + N + K++ +S + V SL L R V + ++
Sbjct: 435 STSCLQLMMDIFGNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYI 494
Query: 835 TSLEHL-----ELEGNPLDCSCE 888
S EH EL+G+ LDC C+
Sbjct: 495 -SPEHQVQLIQELDGHVLDCVCD 516
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.5 bits (58), Expect = 3.7
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Frame = +1
Query: 526 AELYKFTLRQKHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLH---N 696
AE+ + +K + + L +T+ H + V T + +L++++H N
Sbjct: 180 AEVNFLCIHKKLRSKRLTPLLIKEVTRRCHLENVWQAVYTAGVLLPSPVSLSRYMHRSLN 239
Query: 697 AKKLVHLNLA-----NNRIKELAMSHLPASVSSLDLTNNLLRDVPSDLGHLTS-LEHLEL 858
KKL + A + KE A HLP + + L L+DVP+ L+ +E EL
Sbjct: 240 WKKLYDIGFAPFPLGSTEKKETAKYHLPPNTQTPGLRPMELKDVPAVQSLLSQYMERFEL 299
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 26.6 bits (56), Expect = 6.5
Identities = 22/94 (23%), Positives = 40/94 (42%)
Frame = +1
Query: 562 HNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIK 741
H ++D+SH N N L + + + + LS G ++F+ A+++ L +
Sbjct: 723 HTHVVIDISHGNEYTANDSLAKASTIDPIYLSVFG----SRFMAVAEQMGRA-LQKTSVS 777
Query: 742 ELAMSHLPASVSSLDLTNNLLRDVPSDLGHLTSL 843
L S + D NL+ + P HL S+
Sbjct: 778 TNVKERLDYSCALFDAKGNLVANAPHMPVHLGSM 811
>SPBC336.08 |spc24||spindle pole body protein
Spc24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 198
Score = 26.6 bits (56), Expect = 6.5
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -1
Query: 883 KNSLMGFLLIPNVPNLSNAQDLKEHL 806
+++L GF + P+V +SN QD++ +
Sbjct: 10 RSTLAGFQIAPDVKTISNIQDIRAQI 35
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 523 LAELYKFTLRQKHHNINILDLSHNN-ITKLNHELDRLTEVV 642
L+ ++K HNI+I+DL+H N I L + VV
Sbjct: 170 LSTVFKNLALASSHNIHIVDLNHRNPIDSLTTHTSMINSVV 210
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 772 VSSLDLTNNLLRDVPSDLGHLTSLEHLELEGNPLDCSCENILLRDRLII 918
++ L N++ P+DL L H+ L G + CS ++ +D L++
Sbjct: 171 IARFRLYGNVVPVFPADLDARLDLAHMYLGGLVVQCSDQHFGKKDNLLL 219
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 26.2 bits (55), Expect = 8.7
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 790 TNNLLRDVPSDLGHLTSLEHLELEGNPLDCSCENI--LLRDRLIIANVVIDNVKCSLPTK 963
T+N + + +++ +L LE L E + LDC + + R + +I++VK S K
Sbjct: 401 TSNKVMENFTEIKNLGGLEFLRSEASSLDCLIDKVNGTYRHCCQALDEIINSVKSSQNMK 460
Query: 964 LKG 972
KG
Sbjct: 461 EKG 463
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 26.2 bits (55), Expect = 8.7
Identities = 25/108 (23%), Positives = 50/108 (46%)
Frame = +1
Query: 553 QKHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANN 732
Q + N + DLS + L ++L R+ V +L N +NLN+++ + ++ +
Sbjct: 72 QSYLNDVLQDLSEDEFVSLYNKLLRIHMGVRKNLEKNFYKNLNEYVFISGEVESMTSDFK 131
Query: 733 RIKELAMSHLPASVSSLDLTNNLLRDVPSDLGHLTSLEHLELEGNPLD 876
+ + L + L + L+L ++ D PSD +++ L LD
Sbjct: 132 KFQSL-LKTLETDIEGLNLVDH-THD-PSDESIKQTVQRLRSSIEGLD 176
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 26.2 bits (55), Expect = 8.7
Identities = 23/71 (32%), Positives = 32/71 (45%)
Frame = +1
Query: 499 LHRATCSNLAELYKFTLRQKHHNINILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNL 678
L + +++AEL TL H + LD+S NNI + LD L + L +
Sbjct: 273 LSSTSLADVAELPVHTL----HKLTFLDISENNIRDI-RSLDHLRTLENLKHLRITLSYF 327
Query: 679 NKFLHNAKKLV 711
NK AK LV
Sbjct: 328 NKPTDIAKLLV 338
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,337,576
Number of Sequences: 5004
Number of extensions: 87159
Number of successful extensions: 314
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 619568602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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