Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_B06
         (1159 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    37   4e-04
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 36.7 bits (81), Expect = 4e-04
 Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
 Frame = +1

Query: 577 LDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNL-NKFLHNAKKLVHLNLANNRIKELAM 753
           LDLS N +T +   L  L  + TLDL  N I N  N    N  +L  L L  N I  L+ 
Sbjct: 436 LDLSGNELTSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNLSR 495

Query: 754 SHL--PASVSSLDLTNNLLRDVPS-DLGHLTSLEHLELEGN 867
             L    ++  L+L  N ++ V          LE + L+GN
Sbjct: 496 GMLWDLPNLQILNLARNKVQHVERYAFERNMRLEAIRLDGN 536



 Score = 36.7 bits (81), Expect = 4e-04
 Identities = 19/84 (22%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
 Frame = +1

Query: 565 NINILDLSHNNITKLN-HELDRLTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIK 741
           N+ IL+L+ N +  +  +  +R   +  + L  N + ++N    +   L+ LNL+ N I+
Sbjct: 503 NLQILNLARNKVQHVERYAFERNMRLEAIRLDGNFLSDINGVFTSIASLLLLNLSENHIE 562

Query: 742 ELAMSHLPASVSSLDLTNNLLRDV 813
               + +P ++  LD+  N +  +
Sbjct: 563 WFDYAFIPGNLKWLDIHGNFIESL 586



 Score = 34.7 bits (76), Expect = 0.002
 Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
 Frame = +1

Query: 574 ILDLSHNNITKLNHELDRLTEVVTLDLSTNGIQNL-NKFLHNAKKLVHLNLANNRIKELA 750
           +L+LS N+I   ++       +  LD+  N I++L N +     K+  L+ ++NRI EL+
Sbjct: 553 LLNLSENHIEWFDYAFIP-GNLKWLDIHGNFIESLGNYYKIRDSKVKTLDASHNRITELS 611

Query: 751 MSHLPASVSSLDLTNNLLRDV-PSDLGHLTSLEHLELEGNPLD 876
              +P SV  L + NN +  V P+      +L  +++  N ++
Sbjct: 612 PLSVPDSVELLFINNNYINLVRPNTFTDKVNLTRVDMYANMIE 654



 Score = 27.9 bits (59), Expect = 0.18
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
 Frame = +1

Query: 568 INILDLSHNNITKLNHELDR-LTEVVTLDLSTNGIQNLNKFLHNAKKLVHLNLANNRIKE 744
           +N L LS N I  ++    R  +++  LDLS N + ++   L +   L  L+L  NRI  
Sbjct: 409 LNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSVPDALRDLALLKTLDLGENRIS- 467

Query: 745 LAMSHLPASVSSLDLTNNLLRDVPSDLGHLT 837
              +    S  +LD     LR + +D+G+L+
Sbjct: 468 ---NFYNGSFRNLDQLTG-LRLIGNDIGNLS 494



 Score = 22.6 bits (46), Expect = 6.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 807  RCSFRSWAFDKFGTFGIRRKP 869
            R S  +WA+ K+G   +R KP
Sbjct: 1019 RESVGAWAYSKYGLRFLRAKP 1039


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 3.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 450 SNRLSRKLRLQYYSRWLTSCHVQ 518
           S  LS K R +Y++R + S H Q
Sbjct: 245 SPELSNKQRFEYFTRTIPSDHYQ 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 292,639
Number of Sequences: 438
Number of extensions: 6025
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 39283326
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)