Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_B05
         (1220 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin, mu/m...    78   1e-14
Z83115-4|CAB05557.3|  422|Caenorhabditis elegans Hypothetical pr...    75   1e-13
L26291-1|AAA72418.1|  422|Caenorhabditis elegans protein ( Caeno...    75   1e-13

>AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin,
           mu/medium chain (clathrinassociated complex) protein 1
           protein.
          Length = 426

 Score = 77.8 bits (183), Expect = 1e-14
 Identities = 44/107 (41%), Positives = 55/107 (51%)
 Frame = +3

Query: 144 MSSSGIYILDVXGKVXISRNYRGDVDLGVIXKXXXXXXXXXXXXXXXXXXQXSECTXVYI 323
           MS SG++ILD+ G V ISRNYRGDVD+  I K                       +  YI
Sbjct: 1   MSISGLFILDLKGNVVISRNYRGDVDMSCIEKFMPLLVEKEDEGSASPVLVHQGISYTYI 60

Query: 324 KXNXXYIVSRTKKNAXIXXVXVFLYRIVEVXXEXFKKLEEEXX*DTW 464
           K    Y+V+ +KKN  +  V   LY+IVEV  E FK LEEE   D +
Sbjct: 61  KYMNVYLVTISKKNTNVILVLSALYKIVEVFCEYFKTLEEEAVRDNF 107


>Z83115-4|CAB05557.3|  422|Caenorhabditis elegans Hypothetical
           protein K11D2.3a protein.
          Length = 422

 Score = 74.5 bits (175), Expect = 1e-13
 Identities = 38/107 (35%), Positives = 54/107 (50%)
 Frame = +3

Query: 144 MSSSGIYILDVXGKVXISRNYRGDVDLGVIXKXXXXXXXXXXXXXXXXXXQXSECTXVYI 323
           M++S ++ILD+ GK  ISRNYRGD+D+  I K                     +   V+I
Sbjct: 1   MATSAMFILDLKGKTIISRNYRGDIDMTAIDKFIHLLMEKEEEGSAAPVLTYQDTNFVFI 60

Query: 324 KXNXXYIVSRTKKNAXIXXVXVFLYRIVEVXXEXFKKLEEEXX*DTW 464
           K    Y+VS  + N  +  +  FLY+ VEV  E FK +EEE   D +
Sbjct: 61  KHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNF 107


>L26291-1|AAA72418.1|  422|Caenorhabditis elegans protein (
           Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
          Length = 422

 Score = 74.5 bits (175), Expect = 1e-13
 Identities = 38/107 (35%), Positives = 54/107 (50%)
 Frame = +3

Query: 144 MSSSGIYILDVXGKVXISRNYRGDVDLGVIXKXXXXXXXXXXXXXXXXXXQXSECTXVYI 323
           M++S ++ILD+ GK  ISRNYRGD+D+  I K                     +   V+I
Sbjct: 1   MATSAMFILDLKGKTIISRNYRGDIDMTAIDKFIHLLMEKEEEGSAAPVLTYQDTNFVFI 60

Query: 324 KXNXXYIVSRTKKNAXIXXVXVFLYRIVEVXXEXFKKLEEEXX*DTW 464
           K    Y+VS  + N  +  +  FLY+ VEV  E FK +EEE   D +
Sbjct: 61  KHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNF 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,568,963
Number of Sequences: 27780
Number of extensions: 138474
Number of successful extensions: 156
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3370329934
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)