Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_B04
         (1159 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical pr...    30   3.6  
U41031-3|AAA82620.1|  164|Caenorhabditis elegans Hypothetical pr...    29   8.2  
AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen prot...    29   8.2  

>Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical protein
            F58G11.2 protein.
          Length = 960

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 21/72 (29%), Positives = 27/72 (37%)
 Frame = -2

Query: 1137 GXXAPGGKIXXXXRXGXXGRXXXXXGAXGXXGXGGXXXTAXVGGGTALXPTXIPTGGGYE 958
            G    GG        G  G      G+ G  G GG   +   G      PT   +GGG+ 
Sbjct: 831  GGGGRGGDFGGSGNFGGSGGGGSFGGSGGGGGFGGVKPSGFGGSRNNAEPTS--SGGGFG 888

Query: 957  KAPRXPEGXKAD 922
             AP+ P G  +D
Sbjct: 889  -APKAPTGFPSD 899


>Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical protein
            R102.6 protein.
          Length = 324

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 977  GIXVGXRAVPPPTXAVCXXPPXPXXP 1054
            G  +G   +PPP   VC  PP P  P
Sbjct: 234  GCNMGCSCLPPPPSPVCMPPPPPPCP 259


>U41031-3|AAA82620.1|  164|Caenorhabditis elegans Hypothetical protein
            C16B8.3 protein.
          Length = 164

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 965  PPPVGIXVGXRAVPPPTXAVCXXPPXP 1045
            PPPVG  VG    PP        PP P
Sbjct: 41   PPPVGAGVGYAPPPPRPYGATYAPPPP 67


>AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen protein
            51 protein.
          Length = 435

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 21/71 (29%), Positives = 23/71 (32%)
 Frame = -2

Query: 1137 GXXAPGGKIXXXXRXGXXGRXXXXXGAXGXXGXGGXXXTAXVGGGTALXPTXIPTGGGYE 958
            G    GG        G  GR      A G  G GG       GGG A        GGG  
Sbjct: 325  GDFPAGGGGGGYSTGGGGGRADSGGAAGGAGGAGGYSGGGGGGGGGAAAGGGYNAGGGGG 384

Query: 957  KAPRXPEGXKA 925
             AP+     +A
Sbjct: 385  GAPQAAPAPQA 395


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,990,360
Number of Sequences: 27780
Number of extensions: 308846
Number of successful extensions: 702
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3151206316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)