Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_B03
(1133 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0653 - 4856197-4856268,4857464-4857506,4857607-4857661,485... 178 6e-45
06_03_0869 + 25548853-25549074,25549191-25549251,25549912-255500... 175 5e-44
06_03_0702 - 23692525-23692613,23692711-23693473 31 2.2
01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078 31 2.2
09_04_0694 - 19529084-19529201,19529464-19529544,19529637-195301... 30 3.9
09_02_0339 + 7452967-7453068,7453281-7453339,7453889-7454701,745... 29 5.1
08_01_0601 - 5268520-5271112,5272448-5272950 29 5.1
05_07_0224 + 28500745-28500978,28501933-28502332,28502416-285024... 29 5.1
05_07_0095 - 27659944-27660795,27660900-27661172,27661280-276613... 29 5.1
10_08_0352 + 17091637-17091945,17092049-17096617,17096975-170971... 29 6.8
03_05_1097 + 30393336-30393578,30393661-30393780,30393859-303940... 29 6.8
03_01_0526 + 3956909-3957071,3957262-3957317,3957398-3957462,395... 29 6.8
11_04_0370 + 16891334-16891469,16891556-16891707,16893277-168936... 29 9.0
09_02_0229 - 6062825-6064899,6064943-6065432,6065479-6065956,606... 29 9.0
>02_01_0653 -
4856197-4856268,4857464-4857506,4857607-4857661,
4857867-4857900,4857989-4858083,4858720-4858780,
4858858-4858932
Length = 144
Score = 178 bits (434), Expect = 6e-45
Identities = 78/143 (54%), Positives = 109/143 (76%), Gaps = 3/143 (2%)
Frame = +3
Query: 234 IGSAWFQRKLNLRPQHRGVHLVTEEILKQVP-ELSQFAVGLCHIQIMHTSASLALNESWD 410
+ + W Q+ + + Q RG HL+T +IL+++ +LS F GL H+ + HTSASL +NE++D
Sbjct: 1 MAAKWAQKTIVIPAQRRGCHLITPKILREIEGDLSGFKCGLAHLFLQHTSASLTINENYD 60
Query: 411 PNVRDDMEMMLNKIVPEG--LPYRHSCEGPDDMPAHVKACFLGSSLTIPITDGKLNLGTW 584
+V+ D E LN+IVPEG P++H+ EGPDDMPAH+K+ G +LTIPITDG LN+GTW
Sbjct: 61 SDVQADTETFLNRIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCALTIPITDGHLNMGTW 120
Query: 585 QGVWLCEHRNHAGSRKIVVTLSG 653
QG+WLCEHR++A SRKIV+TL+G
Sbjct: 121 QGIWLCEHRDNASSRKIVITLNG 143
>06_03_0869 +
25548853-25549074,25549191-25549251,25549912-25550006,
25550094-25550127,25550551-25550605,25550687-25550729,
25551064-25551135
Length = 193
Score = 175 bits (426), Expect = 5e-44
Identities = 76/139 (54%), Positives = 107/139 (76%), Gaps = 3/139 (2%)
Frame = +3
Query: 246 WFQRKLNLRPQHRGVHLVTEEILKQV-PELSQFAVGLCHIQIMHTSASLALNESWDPNVR 422
W QR + + PQ RG HL+T +I+ + +LS+F G+ H+ + HTSASL +NE++D +V+
Sbjct: 54 WAQRTVVIPPQRRGCHLITPKIVNGIRDDLSEFKCGMAHLFLQHTSASLTINENYDSDVQ 113
Query: 423 DDMEMMLNKIVPEG--LPYRHSCEGPDDMPAHVKACFLGSSLTIPITDGKLNLGTWQGVW 596
D E L++IVPEG P+RH+ EGPDDMPAH+K+ G +LTIPITDG+LN+GTWQG+W
Sbjct: 114 FDTETFLSRIVPEGPSAPWRHTIEGPDDMPAHIKSSMFGCALTIPITDGRLNMGTWQGIW 173
Query: 597 LCEHRNHAGSRKIVVTLSG 653
LCEHR++A R+IV+TL+G
Sbjct: 174 LCEHRDYATPRQIVITLNG 192
>06_03_0702 - 23692525-23692613,23692711-23693473
Length = 283
Score = 30.7 bits (66), Expect = 2.2
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 798 GRGVC-GAGFTSACSWRRGASACAGSR 721
G GVC G+ F A WRRGA A A R
Sbjct: 194 GAGVCRGSSFPMAIDWRRGAGAVAVRR 220
>01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078
Length = 455
Score = 30.7 bits (66), Expect = 2.2
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 798 GRGVC-GAGFTSACSWRRGASACAGSR 721
G GVC G+ F A WRRGA A A R
Sbjct: 279 GAGVCRGSSFPMAIDWRRGAGAVAMRR 305
>09_04_0694 -
19529084-19529201,19529464-19529544,19529637-19530136,
19530444-19530540,19530633-19530775,19531187-19531528,
19531810-19532031,19532292-19532330,19532386-19532601,
19533101-19533196,19533416-19533481,19533777-19533821,
19533903-19533965,19534274-19534344,19534599-19534699,
19534896-19534972,19535856-19535900
Length = 773
Score = 29.9 bits (64), Expect = 3.9
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 406 QLSFRARLAEVCIICI*QRPTANCDSSGTCFRISSVTRCTPR 281
Q SF + L + + ++PT+ D S CF SS+ R +PR
Sbjct: 591 QTSFNSALTLGKALLLQEQPTSPSDGSSRCFDRSSLERISPR 632
>09_02_0339 +
7452967-7453068,7453281-7453339,7453889-7454701,
7455123-7455498,7455978-7456019
Length = 463
Score = 29.5 bits (63), Expect = 5.1
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +3
Query: 279 HRGVHLVTEEILKQVPELSQFAVGLCHIQIMHTSASLALNESWDPNVRDDMEMMLNKIVP 458
H+ VH++ + QV +F + LC + + + AL + DP V ++ + + P
Sbjct: 156 HQVVHIINHQYHFQVVRTIRFPLALCLVHLTSEVRTDAL-LAGDPMVLNNGDFNARFVCP 214
Query: 459 EGLPYRHSC 485
+ L R +C
Sbjct: 215 DNLDNRRNC 223
>08_01_0601 - 5268520-5271112,5272448-5272950
Length = 1031
Score = 29.5 bits (63), Expect = 5.1
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +3
Query: 495 DDMPAHVKACFL---GSSLTIPITDGKL 569
DD+P H+K CFL G + PI GKL
Sbjct: 486 DDLPTHLKPCFLYFAGFTAQTPICAGKL 513
>05_07_0224 +
28500745-28500978,28501933-28502332,28502416-28502480,
28502633-28502692,28502865-28503014,28503386-28503541,
28503648-28503785,28503874-28503947,28504172-28504273,
28505415-28505604,28505756-28505830
Length = 547
Score = 29.5 bits (63), Expect = 5.1
Identities = 21/80 (26%), Positives = 37/80 (46%)
Frame = -1
Query: 494 RSLARVAVR*TLWHYLVEHHFHVIPHIRIPTLI*SKTRRSVHYLYMTEADRELRQFRHLF 315
R LA+ VR ++ ++E+H H++ + + ++Y + DR RQF HL
Sbjct: 387 RKLAKDDVRELIYREILEYHPHMLQEYL-------RGGDQMSFMYPSGVDRFKRQFAHLE 439
Query: 314 QDLLCDEVHAPVLWPQIQLP 255
+ + E +P L LP
Sbjct: 440 EGVSKGEKSSPQLRQNASLP 459
>05_07_0095 -
27659944-27660795,27660900-27661172,27661280-27661354,
27661683-27661837,27661935-27662051,27662148-27662487
Length = 603
Score = 29.5 bits (63), Expect = 5.1
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Frame = -3
Query: 519 LSHGLAYHQVPRK-SGGKVDPLALSC*ASFPCHPSH*DPNSHLEQDSP---KCALSVYDR 352
+ HGL + R S PLALS +S S DP S ++ + P + ALS
Sbjct: 8 IGHGLDRFRWRRSTSSSSSSPLALSLSSSSAAALSDDDPGSPMDPEMPPAARRALSRSSG 67
Query: 351 GRPRIATVPAPVSGSPL*RGARPGAVASNSA 259
R R++ P++G P + P +S A
Sbjct: 68 SRGRLSFELPPLAGGPSDKEEAPPRTSSAPA 98
>10_08_0352 +
17091637-17091945,17092049-17096617,17096975-17097187,
17097266-17097494,17097857-17097981
Length = 1814
Score = 29.1 bits (62), Expect = 6.8
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +3
Query: 495 DDMPAHVKACFLGSSLTIP--ITDGKLNLGTWQGVWLCEHRNHAGSRKI 635
DDMP H+K CFL SL + D + + W + R AG ++
Sbjct: 423 DDMPCHLKQCFLYCSLFLSDFAVDRRSLVQQWIAEGFVQIRGDAGVEEV 471
>03_05_1097 +
30393336-30393578,30393661-30393780,30393859-30394017,
30394184-30394225,30394336-30394508,30394600-30394705,
30394795-30394824
Length = 290
Score = 29.1 bits (62), Expect = 6.8
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = -1
Query: 446 VEHHFHVIPHIRIPTLI*SKTRRSVHYLYMTEADRELRQFRHLF 315
VE H PHI +P+ + TR S HYLY + ++R R + H F
Sbjct: 43 VEGHHVQKPHI-VPSCKVNFTRAS-HYLYRSLSERTTRHWLHRF 84
>03_01_0526 +
3956909-3957071,3957262-3957317,3957398-3957462,
3957560-3958006,3958102-3958227,3958328-3958511,
3958788-3958943
Length = 398
Score = 29.1 bits (62), Expect = 6.8
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +2
Query: 215 LEPRNSDWIRVVSKEAEFEATAPGRAPRHRG--DPETGAGTV 334
+EP++ DW RVVS+ E AP DPE G V
Sbjct: 4 MEPKDIDWSRVVSRYVRDETYEGIEAPHWADLTDPEAGVAAV 45
>11_04_0370 +
16891334-16891469,16891556-16891707,16893277-16893639,
16893832-16893929,16893983-16896029
Length = 931
Score = 28.7 bits (61), Expect = 9.0
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +3
Query: 426 DMEMMLNKIVPE-GLPYRHSCEGPDDMPAHVKACFLGSSLTIPIT--DGKLNLGTWQGVW 596
D+E N+++P L Y+H MP H+K CF+ SL + T D + + W+ +
Sbjct: 314 DLERSQNEVLPALELSYKH-------MPMHLKLCFVSLSLYLKDTYFDESIVVWLWKSLH 366
Query: 597 LCE 605
L +
Sbjct: 367 LLQ 369
>09_02_0229 -
6062825-6064899,6064943-6065432,6065479-6065956,
6066333-6066382,6068917-6069172,6069358-6069503
Length = 1164
Score = 28.7 bits (61), Expect = 9.0
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 495 DDMPAHVKACFLGSSLTIPITDGKLNLGTWQGVWLCEHRNHAGSRKIVVTLS 650
+D+P H+K CFL SL++ D L + + +W+ E H + I L+
Sbjct: 535 EDLPPHLKQCFL--SLSLFPADYDLAIWDLRALWVAEGFLHPKEQLIAEELA 584
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,826,001
Number of Sequences: 37544
Number of extensions: 565378
Number of successful extensions: 1724
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1719
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3433095624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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