Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_B02
         (1189 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    76   2e-12
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    44   0.008
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    42   0.041
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    37   1.2  
UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1; ...    35   4.7  
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0...    34   8.3  

>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 76.2 bits (179), Expect = 2e-12
 Identities = 37/61 (60%), Positives = 37/61 (60%)
 Frame = +3

Query: 672 FPLXAPSCALLXRXXRLPXTXPPFSLXEXWXXLIAHAXXXSXRCXSSPQXGAXXTNPPXX 851
           FPL APSCALL R  RLP T PPFSL E W  LIAHA   S RC S     A  TNPP  
Sbjct: 48  FPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFS 107

Query: 852 P 854
           P
Sbjct: 108 P 108



 Score = 49.6 bits (113), Expect = 2e-04
 Identities = 29/61 (47%), Positives = 31/61 (50%)
 Frame = +1

Query: 586 GXAPLTSITKIDAXVRGGETXQXYKXTXXXXXXXXXXXXCXXPXXYRIPXRLSPFXXRGA 765
           G APLTSITKIDA VRGGET Q YK T               P   R+P    PF  R A
Sbjct: 19  GSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPC--RLPDTCPPFSLREA 76

Query: 766 F 768
           +
Sbjct: 77  W 77


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 44.0 bits (99), Expect = 0.008
 Identities = 32/81 (39%), Positives = 37/81 (45%)
 Frame = +1

Query: 418 TRXARSXGCGERXRGXXXGVIRLXKXXGDTAGXNMXTKXXQXAXNRKXAXLLASPXGXAP 597
           TR ARS GCGER R        L    G+       T   +    R+    +    G AP
Sbjct: 43  TRYARSFGCGERYR--------LTDGDGNFLEDTRKTLSKEEIRPRRSRFSI----GSAP 90

Query: 598 LTSITKIDAXVRGGETXQXYK 660
           LTSI K DA + GGET Q YK
Sbjct: 91  LTSIAKSDAQISGGETRQDYK 111


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 41.5 bits (93), Expect = 0.041
 Identities = 19/27 (70%), Positives = 20/27 (74%)
 Frame = +1

Query: 586 GXAPLTSITKIDAXVRGGETXQXYKXT 666
           G APLTSITK DA + GGET Q YK T
Sbjct: 55  GSAPLTSITKSDAQISGGETRQDYKDT 81


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 36.7 bits (81), Expect = 1.2
 Identities = 16/27 (59%), Positives = 16/27 (59%)
 Frame = +2

Query: 335 VSPAXMNRPTRGERXXAYWXXXRXXXH 415
           V  A MNRPTRGER  AYW   R   H
Sbjct: 23  VPAALMNRPTRGERRFAYWALFRFLAH 49


>UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides capillosus ATCC 29799|Rep: Putative
           uncharacterized protein - Bacteroides capillosus ATCC
           29799
          Length = 37

 Score = 34.7 bits (76), Expect = 4.7
 Identities = 18/30 (60%), Positives = 18/30 (60%)
 Frame = +2

Query: 713 LXXTXYLPAFLPSGXVXXSHSSRXXXLXXV 802
           L  T YL AFLPSG V  SHSSR   L  V
Sbjct: 8   LPLTGYLSAFLPSGSVALSHSSRCRYLSSV 37


>UniRef50_UPI00015C640B Cluster: hypothetical protein
           CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
           BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
           Citrobacter koseri ATCC BAA-895
          Length = 99

 Score = 33.9 bits (74), Expect = 8.3
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = -3

Query: 845 RGVXXXXPXLGGRXTPX*XTXXVSYEXAPRFXKGER 738
           RGV    P    R  P   T  VSYE APRF KG++
Sbjct: 26  RGVRAYSPAWSERPKPSRDTSSVSYEKAPRFPKGKK 61


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 468,702,089
Number of Sequences: 1657284
Number of extensions: 4506915
Number of successful extensions: 3233
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3231
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 119132054599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)