Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_B01
         (1149 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    26   0.54 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   1.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   2.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   2.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   6.7  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 26.2 bits (55), Expect = 0.54
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -1

Query: 645 QREQRYPTEDDERDPVEARPHVREAPQQHAELQRVHQVLHQEQSAQ 508
           Q   +  T+     P + + H  +A QQH +    H +  Q+Q +Q
Sbjct: 167 QMHHQMHTQHPHMQPQQGQ-HQSQAQQQHLQAHEQHMMYQQQQQSQ 211


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 93   FLILTRYVKCQHARVST-LAMHHPRPPCLVRPTATAP 200
            F++ +  V+ +H      L +HH   PC++R +  AP
Sbjct: 1079 FVLHSLAVELEHGAAGLRLCLHHRDLPCVLRASTPAP 1115


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +1

Query: 364 KNVLQAVQKTNDGHPFKWL 420
           + +L+A +++N   PF+WL
Sbjct: 210 RGILEAARRSNLSQPFQWL 228


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +1

Query: 364 KNVLQAVQKTNDGHPFKWL 420
           + +L+A +++N   PF+WL
Sbjct: 300 RGILEAARRSNLSQPFQWL 318


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 616 ILGWIALFTLPKAYEMNKAQVDANLELAR 702
           I+G I L  +  AY+ ++ +    +ELAR
Sbjct: 834 IIGGIGLIIIEVAYKKHQIRKQKKMELAR 862


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,064
Number of Sequences: 438
Number of extensions: 2480
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 38921823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)