Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_A22
(1220 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 33 0.31
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.31
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.31
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.7
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 30 2.9
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.9
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.9
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.9
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 30 3.8
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 29 8.8
L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family ... 29 8.8
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 29 8.8
L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family ... 29 8.8
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 29 8.8
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 33.5 bits (73), Expect = 0.31
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -2
Query: 697 PPXXXXXPXXPPXXKXFXPXXPPXXGKXXTPPXXXKXPXPPP 572
PP P PP P PP G PP P PPP
Sbjct: 77 PPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPP 118
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 33.5 bits (73), Expect = 0.31
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = -2
Query: 706 PXXP-PXXXXXPXXPPXXKXFXPXXPPXXGKXXTPPXXXKXPXPPP 572
P P P P PP + P PP G+ PP P PPP
Sbjct: 276 PMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPP 321
Score = 28.7 bits (61), Expect = 8.8
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = -2
Query: 997 GXXXXPPPXXXXXPPPPXXKXXXXXXXKKXPPPPP 893
G PP PPPP + PPPPP
Sbjct: 305 GRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPP 339
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 33.5 bits (73), Expect = 0.31
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = -2
Query: 706 PXXP-PXXXXXPXXPPXXKXFXPXXPPXXGKXXTPPXXXKXPXPPP 572
P P P P PP + P PP G+ PP P PPP
Sbjct: 286 PMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPP 331
Score = 28.7 bits (61), Expect = 8.8
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = -2
Query: 997 GXXXXPPPXXXXXPPPPXXKXXXXXXXKKXPPPPP 893
G PP PPPP + PPPPP
Sbjct: 315 GRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPP 349
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 1.7
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = -2
Query: 997 GXXXXPPPXXXXXPPPPXXKXXXXXXXKKXPPPPP 893
G PPP PPPP PPPPP
Sbjct: 756 GGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 1.7
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = -2
Query: 997 GXXXXPPPXXXXXPPPPXXKXXXXXXXKKXPPPPP 893
G PPP PPPP PPPPP
Sbjct: 756 GGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 1.7
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = -2
Query: 997 GXXXXPPPXXXXXPPPPXXKXXXXXXXKKXPPPPP 893
G PPP PPPP PPPPP
Sbjct: 339 GGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 373
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 30.3 bits (65), Expect = 2.9
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = -3
Query: 705 PXPPPXXXXPXXXPXXKKXFXXXXPPFXXKXXPPPXGXKXXXPPP 571
P PPP P P PP PPP PPP
Sbjct: 325 PPPPPMKLDPSPQPAATPVEITEIPPIISPPAPPPPPPPPPPPPP 369
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.3 bits (65), Expect = 2.9
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -2
Query: 982 PPPXXXXXPPPPXXKXXXXXXXKKXPPPPP 893
PPP PPPP PPPPP
Sbjct: 273 PPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 302
Score = 29.9 bits (64), Expect = 3.8
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -2
Query: 982 PPPXXXXXPPPPXXKXXXXXXXKKXPPPPP 893
PPP PPPP PPPPP
Sbjct: 272 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPP 301
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.3 bits (65), Expect = 2.9
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -2
Query: 982 PPPXXXXXPPPPXXKXXXXXXXKKXPPPPP 893
PPP PPPP PPPPP
Sbjct: 294 PPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 323
Score = 29.9 bits (64), Expect = 3.8
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -2
Query: 982 PPPXXXXXPPPPXXKXXXXXXXKKXPPPPP 893
PPP PPPP PPPPP
Sbjct: 293 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPP 322
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.3 bits (65), Expect = 2.9
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -2
Query: 982 PPPXXXXXPPPPXXKXXXXXXXKKXPPPPP 893
PPP PPPP PPPPP
Sbjct: 279 PPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 308
Score = 29.9 bits (64), Expect = 3.8
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -2
Query: 982 PPPXXXXXPPPPXXKXXXXXXXKKXPPPPP 893
PPP PPPP PPPPP
Sbjct: 278 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPP 307
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 29.9 bits (64), Expect = 3.8
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -2
Query: 982 PPPXXXXXPPPPXXKXXXXXXXKKXPPP 899
PPP PPPP K K PPP
Sbjct: 175 PPPPTTKAPPPPTTKAPPPPTTKAPPPP 202
Score = 29.9 bits (64), Expect = 3.8
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -2
Query: 982 PPPXXXXXPPPPXXKXXXXXXXKKXPPP 899
PPP PPPP K K PPP
Sbjct: 183 PPPPTTKAPPPPTTKAPPPPTTKAPPPP 210
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 28.7 bits (61), Expect = 8.8
Identities = 24/75 (32%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
Frame = -2
Query: 709 NPXXPPXXXXXPXXPPXXKXFXPXXPPXXGKXXTP-PXXXKXPXPPPXXXXXXXFFXGXX 533
NP PP P PP K P PP G P P K P PP G
Sbjct: 118 NPGRPPKEPCEPITPPPCKP-CPEGPP--GPAGPPGPQGNKGPLGPPGPPGP----EGPN 170
Query: 532 XXXXKKKPPXPXGXG 488
K P P G G
Sbjct: 171 GTAGNKGPAGPPGPG 185
>L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family
protein 1, isoform b protein.
Length = 737
Score = 28.7 bits (61), Expect = 8.8
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +3
Query: 894 GGGGGXFFXXXXXXXXXXGGGGXXXXXGGGXXKXP 998
GGGGG F GGGG GGG P
Sbjct: 119 GGGGGGFGDILGGIGSLIGGGGGGQYNGGGGNVNP 153
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 28.7 bits (61), Expect = 8.8
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +3
Query: 894 GGGGGXFFXXXXXXXXXXGGGGXXXXXGGGXXKXP 998
GGGGG F GGGG GGG P
Sbjct: 144 GGGGGGFGDILGGIGSLIGGGGGGQYNGGGGNVNP 178
>L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family
protein 1, isoform a protein.
Length = 780
Score = 28.7 bits (61), Expect = 8.8
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +3
Query: 894 GGGGGXFFXXXXXXXXXXGGGGXXXXXGGGXXKXP 998
GGGGG F GGGG GGG P
Sbjct: 165 GGGGGGFGDILGGIGSLIGGGGGGQYNGGGGNVNP 199
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 28.7 bits (61), Expect = 8.8
Identities = 24/75 (32%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
Frame = -2
Query: 709 NPXXPPXXXXXPXXPPXXKXFXPXXPPXXGKXXTP-PXXXKXPXPPPXXXXXXXFFXGXX 533
NP PP P PP K P PP G P P K P PP G
Sbjct: 120 NPGRPPKEPCEPLTPPPCKP-CPEGPP--GPAGPPGPDGNKGPLGPPGPPGP----EGPN 172
Query: 532 XXXXKKKPPXPXGXG 488
K P P G G
Sbjct: 173 GEPGNKGPAGPPGPG 187
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.155 0.507
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,531,874
Number of Sequences: 27780
Number of extensions: 269684
Number of successful extensions: 1613
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3370329934
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
- SilkBase 1999-2023 -