Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_A20
         (1221 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc...   116   7e-27
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa...   116   7e-27

>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  116 bits (279), Expect = 7e-27
 Identities = 61/124 (49%), Positives = 71/124 (57%)
 Frame = +3

Query: 144 LGPQHFVGATVFGVAPIFASFNATFVHVTDXSGRXTLARVTGGMXVXADRXXXXXXXXXX 323
           +GPQ   G  VFGVA IFASFN TFVH+TD +G+ T+ RVTGGM V  DR          
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64

Query: 324 XXXXXXXKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 503
                  KCK +GITALHIK+RA            AQ          M+IGRIEDVTP+P
Sbjct: 65  AAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIP 124

Query: 504 SDST 515
           +DST
Sbjct: 125 TDST 128


>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score =  116 bits (279), Expect = 7e-27
 Identities = 61/124 (49%), Positives = 71/124 (57%)
 Frame = +3

Query: 144 LGPQHFVGATVFGVAPIFASFNATFVHVTDXSGRXTLARVTGGMXVXADRXXXXXXXXXX 323
           +GPQ   G  VFGVA IFASFN TFVH+TD +G+ T+ RVTGGM V  DR          
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64

Query: 324 XXXXXXXKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 503
                  KCK +GITALHIK+RA            AQ          M+IGRIEDVTP+P
Sbjct: 65  AAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIP 124

Query: 504 SDST 515
           +DST
Sbjct: 125 TDST 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,047,760
Number of Sequences: 5004
Number of extensions: 35802
Number of successful extensions: 76
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 661404424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)