Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_A20
         (1221 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425...   122   4e-28
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315...   110   2e-24
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335...   101   2e-21
08_02_0250 + 14772746-14773037,14773141-14773203,14773458-147736...    31   1.8  
01_07_0074 - 40894916-40895754,40896322-40896691,40897239-408972...    29   5.6  

>04_03_0871 -
           20441689-20441756,20442220-20442349,20442422-20442507,
           20444271-20444316,20444425-20444547,20445302-20445370
          Length = 173

 Score =  122 bits (295), Expect = 4e-28
 Identities = 68/126 (53%), Positives = 72/126 (57%)
 Frame = +3

Query: 138 VPLGPQHFVGATVFGVAPIFASFNATFVHVTDXSGRXTLARVTGGMXVXADRXXXXXXXX 317
           V LGP    G  VFGVA IFASFN TF+HVTD SGR TL R+TGGM V ADR        
Sbjct: 37  VTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAA 96

Query: 318 XXXXXXXXXKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTP 497
                    +CK LGITALHIKLRA            AQ          MKIGRIEDVTP
Sbjct: 97  MLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTP 156

Query: 498 VPSDST 515
           VP+DST
Sbjct: 157 VPTDST 162


>02_04_0100 -
           19730137-19730237,19731215-19731344,19731419-19731504,
           19732410-19732455,19732558-19732680,19732779-19732781
          Length = 162

 Score =  110 bits (264), Expect = 2e-24
 Identities = 68/137 (49%), Positives = 72/137 (52%), Gaps = 11/137 (8%)
 Frame = +3

Query: 138 VPLGPQHFVGATVFGVAPIFASFNATFVHVTDXSGRXTLARVTGGMXVXADRXXXXXXXX 317
           V LGP    G  VFGVA IFASFN TF+HVTD SGR TL R+TGGM V ADR        
Sbjct: 15  VTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAA 74

Query: 318 XXXXXXXXXKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRI----- 482
                    +CK LGITALHIKLRA            AQ          MKIGRI     
Sbjct: 75  MLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIADDVL 134

Query: 483 ------EDVTPVPSDST 515
                 EDVTPVP+DST
Sbjct: 135 SIFCHTEDVTPVPTDST 151


>02_01_0469 -
           3359156-3359500,3359595-3359680,3359766-3359811,
           3359897-3360016,3360622-3360624
          Length = 199

 Score =  101 bits (241), Expect = 2e-21
 Identities = 58/115 (50%), Positives = 61/115 (53%)
 Frame = +3

Query: 138 VPLGPQHFVGATVFGVAPIFASFNATFVHVTDXSGRXTLARVTGGMXVXADRXXXXXXXX 317
           V LGP    G  VFGVA IFASFN TF+HVTD SGR TL R+TGGM V ADR        
Sbjct: 14  VTLGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAA 73

Query: 318 XXXXXXXXXKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRI 482
                    +CK LGITALHIKLRA            AQ          MKIGRI
Sbjct: 74  MLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRI 128


>08_02_0250 +
           14772746-14773037,14773141-14773203,14773458-14773621,
           14774126-14774220,14774517-14774728,14774972-14775009,
           14775131-14775424,14775510-14775617
          Length = 421

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = +2

Query: 368 GLAHKAPCYWWKQNKDPWSWCSVCTSGSCSFKYEDWPH*RCHPRTIRLYP*EGWPKRTQA 547
           G  H  PC+ W    + W WC    SG C   +  WP      +  R+YP  G P +  A
Sbjct: 345 GKPHGWPCWGW-DGAEMWLWCQSKNSGHC---HIGWPV-GVLVKGGRIYPGGGLPSKELA 399


>01_07_0074 -
           40894916-40895754,40896322-40896691,40897239-40897291,
           40897456-40897593,40897646-40897716,40898655-40898900,
           40899205-40899386,40899494-40899697
          Length = 700

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 198 RKWVRHQTXLRPRNAGARGAPGPP 127
           R+W  H + LR R    RG PG P
Sbjct: 201 RRWCPHSSHLRARRGAERGDPGAP 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,889,021
Number of Sequences: 37544
Number of extensions: 298346
Number of successful extensions: 754
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3747967944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)