Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_A19
(1198 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 96 1e-20
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 88 2e-18
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 73 1e-13
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 34 0.034
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 33 0.10
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 29 0.97
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 28 2.2
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 9.0
SPBC211.05 |||splicing factor 3B|Schizosaccharomyces pombe|chr 2... 26 9.0
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 95.9 bits (228), Expect = 1e-20
Identities = 48/105 (45%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Frame = +1
Query: 601 KAKQMSIGRKKFNMDPKKGIEYLYENGLL-QRTPEDVAQFLHKGEGLSKTAIGDYLGERS 777
+ KQ+ +KFN PK+GI+ L + + +TP D+A+FL EGL K +G+YLGE +
Sbjct: 699 RKKQLQEAIQKFNYKPKEGIKILLSSHFIASKTPTDIAKFLISTEGLDKAVLGEYLGEGN 758
Query: 778 EFNEAVLKAFVDLHDFTDLILVQALRQFLWSFRLPGEAXXIXRMM 912
+ N A++ +FVD F D+ V ALR FL FRLPGEA I R M
Sbjct: 759 DENIAIMHSFVDHMSFNDIPFVNALRSFLQKFRLPGEAQKIDRFM 803
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 88.2 bits (209), Expect = 2e-18
Identities = 49/124 (39%), Positives = 69/124 (55%), Gaps = 1/124 (0%)
Frame = +1
Query: 580 EECKQNSKAKQMSIGRKKFNMDPKKGIEYLYENGLLQ-RTPEDVAQFLHKGEGLSKTAIG 756
E KQ K + I KFN P +G++ L EN + P+ +A+FL + +G+ KT +G
Sbjct: 703 ESNKQRKKLLRTCIN--KFNYKPTRGLKMLSENEYVDINDPKAIAEFLFRADGIDKTTLG 760
Query: 757 DYLGERSEFNEAVLKAFVDLHDFTDLILVQALRQFLWSFRLPGEAXXIXRMMECFGPXIL 936
DYLGE E + +V+ F+D F +L V ALR+ L FRLPGEA I R+M F +
Sbjct: 761 DYLGEGDEKSISVMHEFIDCLSFINLKFVDALRRLLQCFRLPGEAQKIDRIMLKFSERYM 820
Query: 937 PXEP 948
P
Sbjct: 821 KENP 824
Score = 29.1 bits (62), Expect = 1.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 929 RYCXLNPDIFTNADTCYVLXF 991
RY NP F NADT Y+L +
Sbjct: 818 RYMKENPSAFANADTAYILAY 838
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 72.5 bits (170), Expect = 1e-13
Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Frame = +1
Query: 592 QNSKAKQMSI-GRKKFNMDPKKGIEYLYENGLLQRT--PEDVAQFLHKGEGLSKTAIGDY 762
++ K K + I G + FN P GI +L ++ +++++ P + +F H LSK +G++
Sbjct: 544 ESKKRKAIIIEGAELFNESPSDGIAFLTQHSIIKQSDNPTCIVEFFHSTNRLSKRVLGEF 603
Query: 763 LGERSEFNEAVLKAFVDLHDFTDLILVQALRQFLWSFRLPGEAXXIXRMMECFGPXILPX 942
L + S N +L AF+ DF + +ALR L SFRLPGE+ I R++E F +
Sbjct: 604 LTKGS--NSHILNAFISAFDFKGKRIDEALRLLLQSFRLPGESQLIERVLETFSHYYMSA 661
Query: 943 EP 948
P
Sbjct: 662 NP 663
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 34.3 bits (75), Expect = 0.034
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +1
Query: 781 FNEAVLKAFVDLHDFTDLILVQALRQFLWSFRLPGEAXXIXRMMECFGPXILPXEPRYLH 960
+N+AVLK ++ L+DF + ++Q+LR + + GE + + F P+ L
Sbjct: 365 YNKAVLKHYISLYDFENTDILQSLRMICGNLYVHGETQELDHFLGEFSNQWCRTNPKGLF 424
Query: 961 XRXHVLRS 984
++ S
Sbjct: 425 CNPQIVHS 432
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 32.7 bits (71), Expect = 0.10
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 914 NALAXRYCXLNPDIFTNADTCYVLXF 991
NA + RY NP +F++ D CY+L F
Sbjct: 432 NAFSKRYFECNPGMFSSQDQCYILVF 457
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 29.5 bits (63), Expect = 0.97
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 914 NALAXRYCXLNPDIFTNADTCYVLXF 991
+ + +Y NPD++ ++D CY+L F
Sbjct: 348 STFSDQYFHCNPDLYDSSDECYILTF 373
Score = 28.7 bits (61), Expect = 1.7
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 796 LKAFVDLHDFTDLILVQALRQFLWSFRLPGEAXXIXRMMECFGPXILPXEP 948
L+ ++ + +F + L ALR+FL + LP E I R++ F P
Sbjct: 309 LRKYLSVVNFKCISLDMALRKFLAVYVLPNETQQIDRVLSTFSDQYFHCNP 359
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 28.3 bits (60), Expect = 2.2
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = -2
Query: 243 ETPVSQADAHGLRVNNALSTKY----EWNLQKRTQP 148
ETPVS+ D N+ + + Y EWNL++R +P
Sbjct: 387 ETPVSEIDISLTAYNDPVISPYYDTEEWNLEQREEP 422
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 226 LTNWCFRSVRSRLDLLCVMCAVR 294
+TNWC S L+LL V C +R
Sbjct: 1101 ITNWCSESGIKSLELLPVCCFLR 1123
>SPBC211.05 |||splicing factor 3B|Schizosaccharomyces pombe|chr
2|||Manual
Length = 85
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 246 TETPVSQADAHGLRVNNALSTKYEW 172
++ + Q A + V NA +TKYEW
Sbjct: 7 SQAKLEQLQARYVGVGNAFTTKYEW 31
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,171,941
Number of Sequences: 5004
Number of extensions: 85303
Number of successful extensions: 227
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 645466968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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