Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_A19
(1198 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical... 101 8e-22
AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical ... 101 8e-22
L15314-3|AAF99986.2| 393|Caenorhabditis elegans Gtp exchange fa... 97 3e-20
AJ236896-1|CAB38534.1| 377|Caenorhabditis elegans GRP1 protein ... 92 6e-19
Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical p... 75 8e-14
AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical... 75 8e-14
U70851-7|AAB09130.3| 640|Caenorhabditis elegans Hypothetical pr... 68 2e-11
EF473218-1|ABQ42570.1| 765|Caenorhabditis elegans Y55D9A.1c pro... 46 5e-05
EF473217-1|ABQ42569.1| 818|Caenorhabditis elegans Y55D9A.1b pro... 46 5e-05
AL032649-5|CAM82814.1| 765|Caenorhabditis elegans Hypothetical ... 46 5e-05
AL032649-2|CAC70120.1| 818|Caenorhabditis elegans Hypothetical ... 46 5e-05
AL032649-1|CAA21701.1| 816|Caenorhabditis elegans Hypothetical ... 46 5e-05
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 33 0.30
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 30 3.7
U39998-8|AAA81104.1| 419|Caenorhabditis elegans Hypothetical pr... 29 6.5
>AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical
protein Y6B3A.1a protein.
Length = 1628
Score = 101 bits (243), Expect = 8e-22
Identities = 49/113 (43%), Positives = 72/113 (63%)
Frame = +1
Query: 613 MSIGRKKFNMDPKKGIEYLYENGLLQRTPEDVAQFLHKGEGLSKTAIGDYLGERSEFNEA 792
M G + F+ PKKG+++L E+G + +VA+F+ K E L+KT +GD+LG+ EFN +
Sbjct: 517 MEQGIQIFSEKPKKGLKFLQEHGFVGTDAVEVAEFMMKEERLNKTQVGDFLGDSDEFNNS 576
Query: 793 VLKAFVDLHDFTDLILVQALRQFLWSFRLPGEAXXIXRMMECFGPXILPXEPR 951
V+ A++D DF+ + ++ ALR FL FRLPGEA I R+M F L PR
Sbjct: 577 VMHAYIDFLDFSSIDILAALRMFLEKFRLPGEAQKIDRLMLKFASRYLDCNPR 629
>AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical
protein Y6B3A.1a protein.
Length = 1628
Score = 101 bits (243), Expect = 8e-22
Identities = 49/113 (43%), Positives = 72/113 (63%)
Frame = +1
Query: 613 MSIGRKKFNMDPKKGIEYLYENGLLQRTPEDVAQFLHKGEGLSKTAIGDYLGERSEFNEA 792
M G + F+ PKKG+++L E+G + +VA+F+ K E L+KT +GD+LG+ EFN +
Sbjct: 517 MEQGIQIFSEKPKKGLKFLQEHGFVGTDAVEVAEFMMKEERLNKTQVGDFLGDSDEFNNS 576
Query: 793 VLKAFVDLHDFTDLILVQALRQFLWSFRLPGEAXXIXRMMECFGPXILPXEPR 951
V+ A++D DF+ + ++ ALR FL FRLPGEA I R+M F L PR
Sbjct: 577 VMHAYIDFLDFSSIDILAALRMFLEKFRLPGEAQKIDRLMLKFASRYLDCNPR 629
>L15314-3|AAF99986.2| 393|Caenorhabditis elegans Gtp exchange
factor for arfs protein1 protein.
Length = 393
Score = 96.7 bits (230), Expect = 3e-20
Identities = 47/111 (42%), Positives = 67/111 (60%)
Frame = +1
Query: 622 GRKKFNMDPKKGIEYLYENGLLQRTPEDVAQFLHKGEGLSKTAIGDYLGERSEFNEAVLK 801
GRKKFN DP K +++L ++ + P+ +A ++ GEGLSK+AIG+ LG+ F L
Sbjct: 67 GRKKFNQDPWKALDWLASRNVVAKDPQALALWMKAGEGLSKSAIGEILGDNRPFALETLD 126
Query: 802 AFVDLHDFTDLILVQALRQFLWSFRLPGEAXXIXRMMECFGPXILPXEPRY 954
F H D+ +V ALRQ+L+SFRLPGE+ I R++E F P Y
Sbjct: 127 RFTKEHKLHDVPIVPALRQYLFSFRLPGESQKINRILEKFAEVYANQNPSY 177
>AJ236896-1|CAB38534.1| 377|Caenorhabditis elegans GRP1 protein
protein.
Length = 377
Score = 92.3 bits (219), Expect = 6e-19
Identities = 46/111 (41%), Positives = 65/111 (58%)
Frame = +1
Query: 622 GRKKFNMDPKKGIEYLYENGLLQRTPEDVAQFLHKGEGLSKTAIGDYLGERSEFNEAVLK 801
GRKKFN DP K +++L ++ + P+ +A + GEGLSK+AIG+ LG+ F L
Sbjct: 51 GRKKFNQDPWKALDWLASRNVVAKDPQALALRMKAGEGLSKSAIGEILGDNRPFALETLD 110
Query: 802 AFVDLHDFTDLILVQALRQFLWSFRLPGEAXXIXRMMECFGPXILPXEPRY 954
F H D+ +V ALRQ+L+SFR PGE+ I R++E F P Y
Sbjct: 111 RFTKEHKLHDVPIVPALRQYLFSFRPPGESQKINRILEKFAEVYANQNPSY 161
>Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical
protein C24H11.7 protein.
Length = 1820
Score = 75.4 bits (177), Expect = 8e-14
Identities = 43/111 (38%), Positives = 61/111 (54%)
Frame = +1
Query: 589 KQNSKAKQMSIGRKKFNMDPKKGIEYLYENGLLQRTPEDVAQFLHKGEGLSKTAIGDYLG 768
+Q + + ++ G + FN PKKGI +L E G+L + + Q+L L K AI DY+
Sbjct: 657 EQKKRKRLIAEGTELFNQSPKKGIAFLREKGILGHDEQSLVQWLRTNPQLDKKAIADYIC 716
Query: 769 ERSEFNEAVLKAFVDLHDFTDLILVQALRQFLWSFRLPGEAXXIXRMMECF 921
R + VL AFV F + L ALR FL +FRLPGE+ I +M+ F
Sbjct: 717 NRK--HAEVLNAFVKSFPFENTRLDVALRMFLETFRLPGESAEIALVMQHF 765
>AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical
protein C24H11.7 protein.
Length = 1820
Score = 75.4 bits (177), Expect = 8e-14
Identities = 43/111 (38%), Positives = 61/111 (54%)
Frame = +1
Query: 589 KQNSKAKQMSIGRKKFNMDPKKGIEYLYENGLLQRTPEDVAQFLHKGEGLSKTAIGDYLG 768
+Q + + ++ G + FN PKKGI +L E G+L + + Q+L L K AI DY+
Sbjct: 657 EQKKRKRLIAEGTELFNQSPKKGIAFLREKGILGHDEQSLVQWLRTNPQLDKKAIADYIC 716
Query: 769 ERSEFNEAVLKAFVDLHDFTDLILVQALRQFLWSFRLPGEAXXIXRMMECF 921
R + VL AFV F + L ALR FL +FRLPGE+ I +M+ F
Sbjct: 717 NRK--HAEVLNAFVKSFPFENTRLDVALRMFLETFRLPGESAEIALVMQHF 765
>U70851-7|AAB09130.3| 640|Caenorhabditis elegans Hypothetical
protein M02B7.5 protein.
Length = 640
Score = 67.7 bits (158), Expect = 2e-11
Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Frame = +1
Query: 601 KAKQMSIGRKKFNMDPKKGIEYLYENGLLQRTPEDVAQFLHKGEGLSKTAIGDYLGE-RS 777
+ +Q I FN P++G++ L G ++ +P+ +A L GLSK+ IG+Y+G S
Sbjct: 224 RKRQYRIALNFFNKKPERGVQLLTAWGFVKNSPDSLASLLFGRRGLSKSMIGEYIGTLHS 283
Query: 778 EFNEAVLKAFVDLHDFTDLILVQALRQFLWSFRLPGEAXXIXRMMECF 921
++ VLK F L D L + ALR+ + F LP EA I R+++ F
Sbjct: 284 PYHSLVLKYFTALIDIRGLEVDVALRKAMQFFILPKEAEKIDRIIQAF 331
>EF473218-1|ABQ42570.1| 765|Caenorhabditis elegans Y55D9A.1c
protein.
Length = 765
Score = 46.0 bits (104), Expect = 5e-05
Identities = 24/87 (27%), Positives = 45/87 (51%)
Frame = +1
Query: 688 QRTPEDVAQFLHKGEGLSKTAIGDYLGERSEFNEAVLKAFVDLHDFTDLILVQALRQFLW 867
+R +A+ L++ + + T + D L E++EF+ +L +++L F+ + ALR+FL
Sbjct: 330 EREAAQIARNLYELKNCTSTQVADRLNEQNEFSFLILVKYLELFQFSTTRIDAALREFLS 389
Query: 868 SFRLPGEAXXIXRMMECFGPXILPXEP 948
L GE+ R++ F L P
Sbjct: 390 RVELRGESSARERLLRVFSARYLECNP 416
>EF473217-1|ABQ42569.1| 818|Caenorhabditis elegans Y55D9A.1b
protein.
Length = 818
Score = 46.0 bits (104), Expect = 5e-05
Identities = 24/87 (27%), Positives = 45/87 (51%)
Frame = +1
Query: 688 QRTPEDVAQFLHKGEGLSKTAIGDYLGERSEFNEAVLKAFVDLHDFTDLILVQALRQFLW 867
+R +A+ L++ + + T + D L E++EF+ +L +++L F+ + ALR+FL
Sbjct: 383 EREAAQIARNLYELKNCTSTQVADRLNEQNEFSFLILVKYLELFQFSTTRIDAALREFLS 442
Query: 868 SFRLPGEAXXIXRMMECFGPXILPXEP 948
L GE+ R++ F L P
Sbjct: 443 RVELRGESSARERLLRVFSARYLECNP 469
>AL032649-5|CAM82814.1| 765|Caenorhabditis elegans Hypothetical
protein Y55D9A.1c protein.
Length = 765
Score = 46.0 bits (104), Expect = 5e-05
Identities = 24/87 (27%), Positives = 45/87 (51%)
Frame = +1
Query: 688 QRTPEDVAQFLHKGEGLSKTAIGDYLGERSEFNEAVLKAFVDLHDFTDLILVQALRQFLW 867
+R +A+ L++ + + T + D L E++EF+ +L +++L F+ + ALR+FL
Sbjct: 330 EREAAQIARNLYELKNCTSTQVADRLNEQNEFSFLILVKYLELFQFSTTRIDAALREFLS 389
Query: 868 SFRLPGEAXXIXRMMECFGPXILPXEP 948
L GE+ R++ F L P
Sbjct: 390 RVELRGESSARERLLRVFSARYLECNP 416
>AL032649-2|CAC70120.1| 818|Caenorhabditis elegans Hypothetical
protein Y55D9A.1b protein.
Length = 818
Score = 46.0 bits (104), Expect = 5e-05
Identities = 24/87 (27%), Positives = 45/87 (51%)
Frame = +1
Query: 688 QRTPEDVAQFLHKGEGLSKTAIGDYLGERSEFNEAVLKAFVDLHDFTDLILVQALRQFLW 867
+R +A+ L++ + + T + D L E++EF+ +L +++L F+ + ALR+FL
Sbjct: 383 EREAAQIARNLYELKNCTSTQVADRLNEQNEFSFLILVKYLELFQFSTTRIDAALREFLS 442
Query: 868 SFRLPGEAXXIXRMMECFGPXILPXEP 948
L GE+ R++ F L P
Sbjct: 443 RVELRGESSARERLLRVFSARYLECNP 469
>AL032649-1|CAA21701.1| 816|Caenorhabditis elegans Hypothetical
protein Y55D9A.1a protein.
Length = 816
Score = 46.0 bits (104), Expect = 5e-05
Identities = 24/87 (27%), Positives = 45/87 (51%)
Frame = +1
Query: 688 QRTPEDVAQFLHKGEGLSKTAIGDYLGERSEFNEAVLKAFVDLHDFTDLILVQALRQFLW 867
+R +A+ L++ + + T + D L E++EF+ +L +++L F+ + ALR+FL
Sbjct: 381 EREAAQIARNLYELKNCTSTQVADRLNEQNEFSFLILVKYLELFQFSTTRIDAALREFLS 440
Query: 868 SFRLPGEAXXIXRMMECFGPXILPXEP 948
L GE+ R++ F L P
Sbjct: 441 RVELRGESSARERLLRVFSARYLECNP 467
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 33.5 bits (73), Expect = 0.30
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = -3
Query: 509 VVRSQADLVLPRGCVPSFRLPNEPYPDGTVASSRLRRPA--PRLNDENQLDTDPRRSGSA 336
V+ S AD +LP VP + NEP P GTVA S P+ P N + DP+ SG
Sbjct: 67 VIASSADPILPTSVVP--QPSNEPSP-GTVAPSDEPSPSGPPSPGPVNPSE-DPQPSGPP 122
Query: 335 APDP 324
+P P
Sbjct: 123 SPGP 126
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 29.9 bits (64), Expect = 3.7
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -3
Query: 479 PRGCVPSFRLPNEPYPDGTVASSRLRRPAPRLNDENQLDTDPRRSGSAAPD 327
P G P++ PN P P+G S +P P N N +DP + G P+
Sbjct: 1029 PNGPTPNWPSPNGPSPNGPNGPSDPNKPGP--NGPNG-PSDPNKPGPNGPN 1076
>U39998-8|AAA81104.1| 419|Caenorhabditis elegans Hypothetical
protein ZK622.1 protein.
Length = 419
Score = 29.1 bits (62), Expect = 6.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 592 QNSKAKQMSIGRKKFNMDPKKGIEYLYENGLLQRTPEDVAQFLHK 726
+N K + K++ D KG+EYL+++G + R +HK
Sbjct: 231 KNEKNNVSLRDKLKYSFDASKGLEYLHQHGCIHRDVAARNFLMHK 275
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,598,432
Number of Sequences: 27780
Number of extensions: 509556
Number of successful extensions: 1315
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3286854270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -