Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_A18
         (1179 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    29   1.3  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    28   2.2  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    28   2.9  
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    27   3.8  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    27   3.8  
SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subun...    27   6.7  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    27   6.7  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    27   6.7  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    26   8.8  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   8.8  
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    26   8.8  

>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +3

Query: 759 HLRARFTKHVKYHSMPMIKCIVCDFRTPYKWNLDRHMKNHGGIGSFKCSMCN 914
           +L++    H  Y      +C +C      + +  RH + H GI +F C  CN
Sbjct: 586 NLKSHMNTHTNYRPF---QCSICKKSFARQHDKRRHEQLHTGIKAFACVTCN 634



 Score = 28.7 bits (61), Expect = 1.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 825 CDFRTPYKWNLDRHMKNHGGIGSFKCSMC 911
           C+ R    +NL  HM  H     F+CS+C
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNYRPFQCSIC 605


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 846 KWNLDRHMKNHGGIGSFKCSMCN 914
           K +L RH + H  + +F CS CN
Sbjct: 40  KEHLRRHERTHENVKAFSCSFCN 62


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +3

Query: 723 KLFSCDKCNYVTHLRARFTKHVKYHS-MPMIKCIVCDFRTPYKWNLDRHMK 872
           ++F CD+C          T+H   HS    I C  C+ +   K  L RH++
Sbjct: 29  RVFPCDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRKDLLKRHIQ 79


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 813 KCIVCDFRTPYKWNLDRHMKNH 878
           K ++ D++TPY   L RH+  H
Sbjct: 172 KIVIQDYQTPYGTTLSRHLTTH 193


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 17/80 (21%), Positives = 34/80 (42%)
 Frame = -2

Query: 389 EMSVTRVYQISAWILSVERALCTVVVSSYLTVGQFKIFGGV*RSARGHVAEEAAFEGARD 210
           E  ++++  I+A++ ++      +     L +G FK    + +     + +E   +    
Sbjct: 359 EYIISQMLLINAFLENIPSKTALLQFKESLRIGNFKSILLILKK----INDEGVLKQLEK 414

Query: 209 CRDLAELRVSRRGHLLKHTP 150
           C  L  L  +   H LKHTP
Sbjct: 415 CVKLVSLDTANEKHFLKHTP 434


>SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subunit
           Rpb9 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 113

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
 Frame = +3

Query: 183 DAQFGEVTTVARAFEGRLLGD--VSSGASSDTAEDFELPHCKIRRNYNCTKCTFYTQNPR 356
           +  + E+   ++ +   L      ++  S D + D  LP    R +  C +C  +     
Sbjct: 31  NCDYSEIAATSKVYRHELQSSNVENTTVSHDASTDPTLP----RSDKECPRC--HQHEAV 84

Query: 357 AYLVHTRDTHFVKLKIYECPHCIYA 431
            Y  H+R    +   IY C HC +A
Sbjct: 85  FYQTHSRRGDTMMTLIYVCVHCGFA 109


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 825 CDFRTPYKWNLDRHMKNHGGIGSFKCSMC 911
           C+ R   K+N++ H++ H     ++C +C
Sbjct: 450 CNKRIARKYNVESHIQTHLSDRPYRCDLC 478


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 783 HVKYHSMPMIKCIVCDFRTPYKWNLDRHMKNHGGIGSFKCS-MCNFTAD 926
           H+ +  + +++C  C F+  +   L +++ N  G  SFKCS +C  T D
Sbjct: 160 HLNFKKL-VLEC-ECAFQKTWLDELVQYLVNDSGDDSFKCSFLCGDTKD 206


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 66  HTSRQPRRVSRRALSRNV*PTQNIILLQRSMLQ 164
           H   +PR + RR + + + P +NI L  R++ Q
Sbjct: 275 HNENEPRALKRRKVQKLLEPDENIELSTRTLSQ 307


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 396 LKIYECPHCIYASRHNQKLVRHVK 467
           +K YECP C       +  VRH++
Sbjct: 1   MKSYECPFCKRVFHRQEHQVRHIR 24


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +3

Query: 339 YTQNPRA--YLVHTRDTHFVKLKIYECP 416
           Y +N +A  Y    RD H V+ K Y CP
Sbjct: 40  YGRNKKALEYAAELRDKHGVQAKAYSCP 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,911,085
Number of Sequences: 5004
Number of extensions: 75292
Number of successful extensions: 222
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 633513876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)