Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_A18
         (1179 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0871 + 23865343-23866016,23866122-23866170,23866276-238663...    32   0.77 
01_06_0917 + 32978306-32978434,32978570-32978645,32979324-329793...    30   3.1  
06_03_1481 - 30436904-30437059,30437150-30437221,30437559-304379...    29   5.4  
03_05_0141 - 21210176-21212140                                         29   5.4  
08_02_1060 + 24007980-24008662,24010078-24010219,24010293-240115...    29   9.4  
08_02_0176 - 13777476-13777568,13779610-13780053                       29   9.4  
03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524           29   9.4  

>12_02_0871 +
           23865343-23866016,23866122-23866170,23866276-23866356,
           23866599-23866718,23866957-23867055,23867135-23867194,
           23867316-23867410,23867483-23867508,23869212-23869285,
           23870194-23870259,23871027-23871099,23871585-23871622,
           23873758-23873871,23876079-23876195,23876288-23876368,
           23876468-23876536,23876631-23876669,23876809-23876973,
           23877380-23877484,23877569-23877637,23877754-23877816,
           23877903-23878021,23878124-23878348,23878409-23878610
          Length = 940

 Score = 32.3 bits (70), Expect = 0.77
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = +1

Query: 52  VLAHRTRPGNQGAFLAARSPG--TFNRHRTLFCYSGVCFSRCPRRLTRNSARSRQSRAPS 225
           V+  R R     A LAA +P   +  R+R       + FS+C RR  + +A+   +R P 
Sbjct: 6   VMMRRARARRPFAVLAAAAPPPPSAGRNRENVEGEAMSFSQCVRRFGKPAAKKGSARTPR 65

Query: 226 KAASSATCPLALLQTP 273
           +A   A    A    P
Sbjct: 66  RATPVAAAAAAAYDAP 81


>01_06_0917 +
           32978306-32978434,32978570-32978645,32979324-32979391,
           32979868-32979959,32980121-32980194,32980372-32980415,
           32980752-32980803,32981200-32981319,32981391-32981503,
           32981674-32981761,32982144-32982229,32982832-32982918,
           32983149-32983252,32983607-32983709,32983861-32983956,
           32984067-32984256,32984352-32984413,32984560-32984664,
           32985163-32985364,32985473-32985681,32986413-32986537,
           32986644-32986695,32986772-32986858,32987125-32987247,
           32987375-32987629
          Length = 913

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +3

Query: 315 YNCTKCTFYTQNPRAYLVHTRDTHFVKLKIYECPHCIYASRHNQKLVRHVKMVHDDLL 488
           +N  K  F + +P  YL+    T   +LK Y     +     N  +V+H+++  DD L
Sbjct: 650 FNTPKSVFKSMSPSQYLIRRVITLENELKCYHQIEGLNQKNENSSVVQHIQVHLDDAL 707


>06_03_1481 - 30436904-30437059,30437150-30437221,30437559-30437902,
            30438014-30438137,30438244-30438386,30438792-30438927,
            30439469-30439818,30440458-30440542
          Length = 469

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 863  SHEKSRWYRKF*MFNVQLYCGYKAELTVHEMNHHTPXXGXSHVNRR 1000
            S E+   YR F   N+ L   + A+L+   +  H P  G SHV  R
Sbjct: 219  SSERQIIYRDFKASNILLDSNFNAKLSDFGLAKHGPDGGLSHVTTR 264


>03_05_0141 - 21210176-21212140
          Length = 654

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 33  LRFSRRRSRAPHTSRQPRRVSRRALSRNV*P 125
           L  + RRSR+P TSR P R  R A +R+  P
Sbjct: 21  LHAAPRRSRSPSTSRPPSRHRRTASARSTLP 51


>08_02_1060 +
           24007980-24008662,24010078-24010219,24010293-24011537,
           24012453-24013040
          Length = 885

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 705 PLKGKDKLFSCDKCNYVTHLRARFTKHVKYHS 800
           P+ GKD  F C  CN     ++R+  HV  H+
Sbjct: 359 PVIGKDGKFECPVCNKTFEEQSRYFGHVGSHA 390


>08_02_0176 - 13777476-13777568,13779610-13780053
          Length = 178

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -1

Query: 666 RKNGQSYHQCTH-PCQAVYRRFPRSLLAYLPFYLAVLAIQFQHSHHLF 526
           R  G  +HQC   P  A +RR       ++PF L  ++    ++H L+
Sbjct: 122 RLEGVQWHQCHWLPAGAPFRRVSGEETKFIPFNLVSVSKSIAYNHQLY 169


>03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524
          Length = 651

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
 Frame = +3

Query: 663 CEIEFEEERFRGDTPLKGKDKLFSCDKCNYVTHLRAR--FTKHVKYHSMPM-IKCIVCDF 833
           CEI++    F+    L    K  +C   +   H R+     +H   H+  M  KC     
Sbjct: 542 CEIDYCRMTFKNRAELSVHKKN-TCTVKSCGRHFRSHKYLRRHQSIHNDDMPYKCPWEGC 600

Query: 834 RTPYKWNLDR--HMKNHGGIGSFKCS 905
              +KW+ DR  H + H G   +KC+
Sbjct: 601 SMAFKWSWDRGEHFQVHAGKRPYKCT 626


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,044,015
Number of Sequences: 37544
Number of extensions: 505297
Number of successful extensions: 1561
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1561
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3608253564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)