Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_A17
         (1188 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...   110   3e-25
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...   110   4e-25
SPCC1442.15c |cox18||mitochondrial inner membrane protein Cox18|...    48   2e-06
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    30   0.55 
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    29   0.96 
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    26   8.9  

>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
            membrane translocase Oxa102|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 409

 Score =  110 bits (265), Expect = 3e-25
 Identities = 62/199 (31%), Positives = 91/199 (45%)
 Frame = +3

Query: 462  PVGLVQNCFEYLHVTLDVPWWGAIVLGTIVVRVVMFPLVILSQRNSAQMNNNLPEIQLLQ 641
            P  ++QN    LH+   +PWW +I    + +R+ +FP+++   + SA++    P++    
Sbjct: 96   PHNILQNGLNTLHIWSGLPWWASIAACAVAMRIAVFPIMLKMMKTSAKLAIINPKVAEHM 155

Query: 642  MKMTQARQTGNQIEAARYAQEMMLFMKEKGLNPLKNLIVPLAQTPLFISFFMGLRGMANC 821
              +++A+  GN     +   ++    K   +NPL  L  P+ Q  LFISFF  L+ MA  
Sbjct: 156  SVLSKAKAEGNSELMMQATTQIQNLYKVNNVNPLNLLSAPVFQGILFISFFYALKTMAGV 215

Query: 822  PVESMTHGGLWWFVDLTVPDQYFLLPVITSATMWATIXLGVXGGRXDAXNMQVMKYVXRA 1001
            PVE  T GG WW  DL+ PD   + PV     M   I LG   G         MK   R 
Sbjct: 216  PVEGFTDGGFWWVNDLSQPDPLHIFPVANGLLMLLNIELGSETGSNKVAMSPSMKKFFRF 275

Query: 1002 XP*XMIPFXXNXPGAIXXY 1058
                   F  N P AI  Y
Sbjct: 276  LCLASPLFTMNFPMAIFMY 294


>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score =  110 bits (264), Expect = 4e-25
 Identities = 52/157 (33%), Positives = 90/157 (57%)
 Frame = +3

Query: 456 WGPVGLVQNCFEYLHVTLDVPWWGAIVLGTIVVRVVMFPLVILSQRNSAQMNNNLPEIQL 635
           W P  L+QN    ++V    PWW +I+L T+ VR+ + P++I S RNS +++   PE++ 
Sbjct: 65  WWPYALIQNTAYTINVYAGAPWWVSIILTTLGVRLALTPVMIASFRNSTKLSVIQPEMKK 124

Query: 636 LQMKMTQARQTGNQIEAARYAQEMMLFMKEKGLNPLKNLIVPLAQTPLFISFFMGLRGMA 815
               +  A+   +Q+   +++  +     +  +NP    I+PL Q+ +F SFF  +R M+
Sbjct: 125 ELEAIKTAKLDNDQLALNQHSIALRGIYLKHNVNPFAIFILPLTQSAVFFSFFYAIRKMS 184

Query: 816 NCPVESMTHGGLWWFVDLTVPDQYFLLPVITSATMWA 926
              V+  T GGL WF DL++PD Y +LP+I +  M++
Sbjct: 185 RLSVDGFTTGGLAWFKDLSIPDPYCILPIINAGLMFS 221


>SPCC1442.15c |cox18||mitochondrial inner membrane protein
           Cox18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 202

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 24/66 (36%), Positives = 35/66 (53%)
 Frame = +3

Query: 720 KEKGLNPLKNLIVPLAQTPLFISFFMGLRGMANCPVESMTHGGLWWFVDLTVPDQYFLLP 899
           K    +PL    +P+ Q PLF      LR   +   ESM+  G+ WF DLT+PD + +LP
Sbjct: 73  KRFNCHPLMIYALPITQLPLFAFASYQLRQAVDVCPESMSTEGMLWFTDLTLPDPHGVLP 132

Query: 900 VITSAT 917
            + + T
Sbjct: 133 AVLAVT 138


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 30.3 bits (65), Expect = 0.55
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
 Frame = -2

Query: 761 WNN*IFKRVQSFFFHEK----HHFLSISCSFNLISSLPGLCHF 645
           W     KR+ +FF H      +HFL+    F L S   GLC F
Sbjct: 88  WIRVFLKRIYTFFVHSARVFLYHFLNEEKEFTLASFFWGLCRF 130


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 29.5 bits (63), Expect = 0.96
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
 Frame = +3

Query: 624 EIQLLQMKMTQARQTGNQIEAARYAQEMMLFMKEKGLNPLKNLIVPLAQT-PLFISFFMG 800
           +I+ L   +T    T    E+A++  +   F  E G+ P    + PL +    F  FF  
Sbjct: 183 QIEKLNTDLTAEMITSRSWESAKF--KSYNFAAE-GIPPAGGCLHPLMKVREEFRKFFFE 239

Query: 801 LRGMANCPVESMTHGGLWWFVDLTVPDQY 887
           L G    P  +    G W F  L VP Q+
Sbjct: 240 L-GFEEMPTNNFVESGFWNFDALFVPQQH 267


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 598 LFLCDKITSGNITTLTTIVPKTIAPHHGTSKVTCRYSKQ 482
           L LC +   G  T   T+   TI  H G  KV  +++++
Sbjct: 31  LMLCGESGLGKTTFCNTLFSTTIKSHMGPEKVRAKHAEK 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,698,139
Number of Sequences: 5004
Number of extensions: 70075
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 639490422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)