Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_A17
(1188 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0659 + 19647037-19647464,19647569-19647659,19648998-196490... 107 1e-23
03_01_0111 + 884501-884970,885069-885147,885530-885574,885838-88... 103 2e-22
03_06_0651 + 35297560-35297895,35298881-35298991,35299670-352997... 43 5e-04
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358... 40 0.004
06_03_1205 - 28406183-28406218,28406462-28406548,28406769-284068... 33 0.33
>10_08_0659 + 19647037-19647464,19647569-19647659,19648998-19649039,
19649179-19649237,19649559-19649634,19649735-19649866,
19650251-19650358,19651040-19651094,19651187-19651437
Length = 413
Score = 107 bits (258), Expect = 1e-23
Identities = 66/227 (29%), Positives = 109/227 (48%)
Frame = +3
Query: 378 ISDAVSAVQSFAANGEPTFASIGLGGWGPVGLVQNCFEYLHVTLDVPWWGAIVLGTIVVR 557
++DA +A ++ A A+ + PV +Q+ +Y+H + WW I L T+++R
Sbjct: 96 LADAAAAAEAVPAPFPGEVAAAAADSFFPVAALQHVIDYIHTFTGLNWWACIALATVLIR 155
Query: 558 VVMFPLVILSQRNSAQMNNNLPEIQLLQMKMTQARQTGNQIEAARYAQEMMLFMKEKGLN 737
PL++ + + ++N PE++ ++ +M A + E A+ LF K G++
Sbjct: 156 SATVPLLVNQLKATQKLNAIRPEMEAIKEEM-NAMDPKSAKEGK--AKMTALFQKH-GVS 211
Query: 738 PLKNLIVPLAQTPLFISFFMGLRGMANCPVESMTHGGLWWFVDLTVPDQYFLLPVITSAT 917
P L L Q P+F+SFF +R M + V SM GG WF DLT PD ++LPV+T+
Sbjct: 212 PFTPLKGLLIQGPIFMSFFFAIRNMID-KVPSMKGGGSLWFTDLTTPDPLYILPVLTALI 270
Query: 918 MWATIXLGVXGGRXDAXNMQVMKYVXRAXP*XMIPFXXNXPGAIXXY 1058
T+ L + G + MK R +PF + I Y
Sbjct: 271 FLVTVELNLQEGMEGNPMARKMKNFSRGMAVLTVPFTMSFAKGIFCY 317
>03_01_0111 + 884501-884970,885069-885147,885530-885574,885838-885903,
886362-886420,886626-886701,886825-886956,887046-887153,
887679-887733,887822-888042
Length = 436
Score = 103 bits (248), Expect = 2e-22
Identities = 71/244 (29%), Positives = 110/244 (45%), Gaps = 17/244 (6%)
Frame = +3
Query: 378 ISDAVSAVQSFAANGEP-TFASIGLGGWGPVGLVQNCFEYLHVTLDVPWWGAIVLGTIVV 554
++DA ++V A P A+ + PV +Q+ + +H + WW I L ++++
Sbjct: 109 LADAAASVPVSAPAPFPGEVAAAAADSFAPVAALQHLIDGVHSLTGLNWWACIALTSLLI 168
Query: 555 RVVMFPLVILSQRNSAQMNNNLPEIQLLQMKMTQARQTGNQIEAARYAQE--------MM 710
R + PL +L+Q + M + I L ++ R GN+ + R E M
Sbjct: 169 RTLTVPL-LLNQMKATAMRPEIEAINLEMRTISSTRIAGNEKSSTRVTDEGSMSTDPQSM 227
Query: 711 LFMKEK--------GLNPLKNLIVPLAQTPLFISFFMGLRGMANCPVESMTHGGLWWFVD 866
L K K G+ PL L Q P+F+SFF + M V S GG++WF D
Sbjct: 228 LEGKRKLGELFLRHGVTPLTPLKGLFIQAPIFMSFFFAISNMVE-KVPSFKGGGIYWFTD 286
Query: 867 LTVPDQYFLLPVITSATMWATIXLGVXGGRXDAXNMQVMKYVXRAXP*XMIPFXXNXPGA 1046
LT PD+ +LP++TS T T+ L + G ++ MK R IPF + P A
Sbjct: 287 LTTPDELLILPMLTSLTFLVTVELNMQDGMEGNPMLKTMKNFSRVMAVLTIPFTMSFPKA 346
Query: 1047 IXXY 1058
I Y
Sbjct: 347 IFFY 350
>03_06_0651 +
35297560-35297895,35298881-35298991,35299670-35299744,
35300165-35300225,35300406-35300479,35300564-35300668,
35301099-35301206,35301604-35301707,35302005-35302223,
35302505-35302646,35302694-35302825,35302962-35303066
Length = 523
Score = 42.7 bits (96), Expect = 5e-04
Identities = 36/128 (28%), Positives = 55/128 (42%)
Frame = +3
Query: 495 LHVTLDVPWWGAIVLGTIVVRVVMFPLVILSQRNSAQMNNNLPEIQLLQMKMTQARQTGN 674
LHV P+ AI+L T++V+ FPL ++ M + P Q+K Q R G+
Sbjct: 121 LHVPY--PYGFAIILLTVLVKAATFPLTKKQVESAIAMRSLQP-----QVKAIQERYAGD 173
Query: 675 QIEAARYAQEMMLFMKEKGLNPLKNLIVPLAQTPLFISFFMGLRGMANCPVESMTHGGLW 854
Q R E K ++PL + L P++I + L +AN E + G +
Sbjct: 174 Q---ERIQLETARLYKLSDVDPLAGCLPTLVTIPVWIGLYRALSNVAN---EGLLTEGFF 227
Query: 855 WFVDLTVP 878
W L P
Sbjct: 228 WIPSLAGP 235
>06_01_0501 -
3587390-3587528,3587922-3588031,3588122-3588187,
3588293-3588410,3588499-3588554,3588647-3588766,
3588937-3589035,3589443-3589490,3589534-3589545,
3590353-3590418,3591412-3591471,3592061-3592162,
3592405-3592426,3592959-3593041,3593166-3593293,
3593775-3593881,3594376-3594845
Length = 601
Score = 39.9 bits (89), Expect = 0.004
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Frame = +3
Query: 381 SDAVSAVQSFAANGEPT-FASIGLGGWGPVGLVQNCFEYL---HVTLDVPWWGAIVLGTI 548
+D V + AA+ + A+ G GG V + + L H +PWW I L T+
Sbjct: 107 ADFGEVVATSAASADAAGVAAAGDGGSASGFAVSSLIDILDGFHNLTGIPWWITISLSTV 166
Query: 549 VVRVVMFPLVILSQRNSAQMNNNLPEI 629
+R+++ P++I + +A++ LPE+
Sbjct: 167 AMRLLILPVLITQIKKAAKIGKLLPEL 193
>06_03_1205 -
28406183-28406218,28406462-28406548,28406769-28406830,
28407968-28408184,28408793-28408957,28409145-28409250,
28409830-28410071,28410493-28410605,28410848-28411043,
28411681-28411827,28412034-28412218,28412478-28412592,
28413237-28413728
Length = 720
Score = 33.5 bits (73), Expect = 0.33
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -3
Query: 601 ALFLCDKITSGNITTLTT--IVPKTIAPHHGTSKVTCRYSKQFCTNP 467
AL C I TLTT ++ K I P HG S VT +S Q C P
Sbjct: 428 ALSACQSIAFDKTGTLTTGKLMCKAIEPIHGHSDVTNDFSDQACCTP 474
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,435,798
Number of Sequences: 37544
Number of extensions: 470833
Number of successful extensions: 1121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3619931772
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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