Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_A16
(1148 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 302 5e-83
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 302 5e-83
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 302 5e-83
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 81 4e-16
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 56 9e-09
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 54 5e-08
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 26 8.6
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 302 bits (742), Expect = 5e-83
Identities = 142/205 (69%), Positives = 160/205 (78%)
Frame = -2
Query: 997 PPARPXDKPLGFXLQXVYKIGGIGTVPXXRVETGVLKPGTIVVFAPXXITTXVXSVEMHX 818
PPARP DKPL LQ VYKIGGIGTVP RVETGV+KPG IV FAP +TT V SVEMH
Sbjct: 235 PPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHH 294
Query: 817 EAXQEAVPGDNVGFNVKNVSVKELRRGYVAGDSXNNPPKGAADFTAQVIVXNHPGQISNG 638
E+ +PGDNVGFNVKNVSVK++RRG V GDS N+PP G A FTAQVI+ NHPGQIS G
Sbjct: 295 ESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAG 354
Query: 637 YTPVLDCXXAXXACXFAEIKEKVDRRTGKXTEVNPKSIKXGDAAXVNLVPSKPXCVESXQ 458
Y+PVLDC A AC FAE+ EK+DRR+GK E +PK +K GDA +VPSKP CVE+
Sbjct: 355 YSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFT 414
Query: 457 EFPPLGRFAVRDMRQTVAVGVIKAV 383
++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 415 DYAPLGRFAVRDMRQTVAVGVIKAV 439
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 302 bits (742), Expect = 5e-83
Identities = 142/205 (69%), Positives = 160/205 (78%)
Frame = -2
Query: 997 PPARPXDKPLGFXLQXVYKIGGIGTVPXXRVETGVLKPGTIVVFAPXXITTXVXSVEMHX 818
PPARP DKPL LQ VYKIGGIGTVP RVETGV+KPG IV FAP +TT V SVEMH
Sbjct: 235 PPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHH 294
Query: 817 EAXQEAVPGDNVGFNVKNVSVKELRRGYVAGDSXNNPPKGAADFTAQVIVXNHPGQISNG 638
E+ +PGDNVGFNVKNVSVK++RRG V GDS N+PP G A FTAQVI+ NHPGQIS G
Sbjct: 295 ESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAG 354
Query: 637 YTPVLDCXXAXXACXFAEIKEKVDRRTGKXTEVNPKSIKXGDAAXVNLVPSKPXCVESXQ 458
Y+PVLDC A AC FAE+ EK+DRR+GK E +PK +K GDA +VPSKP CVE+
Sbjct: 355 YSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFT 414
Query: 457 EFPPLGRFAVRDMRQTVAVGVIKAV 383
++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 415 DYAPLGRFAVRDMRQTVAVGVIKAV 439
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 302 bits (742), Expect = 5e-83
Identities = 142/205 (69%), Positives = 160/205 (78%)
Frame = -2
Query: 997 PPARPXDKPLGFXLQXVYKIGGIGTVPXXRVETGVLKPGTIVVFAPXXITTXVXSVEMHX 818
PPARP DKPL LQ VYKIGGIGTVP RVETGV+KPG IV FAP +TT V SVEMH
Sbjct: 235 PPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHH 294
Query: 817 EAXQEAVPGDNVGFNVKNVSVKELRRGYVAGDSXNNPPKGAADFTAQVIVXNHPGQISNG 638
E+ +PGDNVGFNVKNVSVK++RRG V GDS N+PP G A FTAQVI+ NHPGQIS G
Sbjct: 295 ESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAG 354
Query: 637 YTPVLDCXXAXXACXFAEIKEKVDRRTGKXTEVNPKSIKXGDAAXVNLVPSKPXCVESXQ 458
Y+PVLDC A AC FAE+ EK+DRR+GK E +PK +K GDA +VPSKP CVE+
Sbjct: 355 YSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFT 414
Query: 457 EFPPLGRFAVRDMRQTVAVGVIKAV 383
++ PLGRFAVRDMRQTVAVGVIKAV
Sbjct: 415 DYAPLGRFAVRDMRQTVAVGVIKAV 439
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 80.6 bits (190), Expect = 4e-16
Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 2/197 (1%)
Frame = -2
Query: 964 FXLQXVYKIGGIGTVPXXRVETGVLKPGTIVVFAPXXITTXVXSV-EMHXEAXQEAVPGD 788
F + K +GT+ ++E G +K + V+ P T V ++ + E ++ GD
Sbjct: 469 FIMPIASKYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGD 528
Query: 787 NVGFNVKNVSVKELRRGYVAGDSXNNPPKGAADFTAQVIVXNHPGQISNGYTPVLDCXXA 608
V V+ +++ GYV S NP F AQ+ + P ++ GY+ V+ A
Sbjct: 529 QVRLRVRGDD-SDVQTGYVL-TSTKNPVHATTRFIAQIAILELPSILTTGYSCVMHIHTA 586
Query: 607 XXACXFAEIKEKVDRRTGKXTEVNPKSIKXGDAAXVNLVPSKPXCVESXQEFPPLGRFAV 428
FA++ K+D+ T + ++ P G L P C+E +++ +GRF +
Sbjct: 587 VEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTL 645
Query: 427 RDMRQTVAVG-VIKAVN 380
RD TVAVG V+K ++
Sbjct: 646 RDQGTTVAVGKVVKILD 662
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 56.0 bits (129), Expect = 9e-09
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Frame = -2
Query: 994 PARPXDKPLGFXLQXVYKIGGIGTVPXXRVETGVLKPGT--IVVFAPXXITTXVXSVEMH 821
P R D P ++ V+ I G GTV RVE G LK G +V + T V +EM
Sbjct: 245 PERKTDVPFLMAIEDVFSISGRGTVVTGRVERGTLKKGAEIEIVGYGSHLKTTVTGIEMF 304
Query: 820 XEAXQEAVPGDNVGFNVKNVSVKELRRGYVAGDSXNNPP 704
+ AV GDN G ++++ ++L+RG + P
Sbjct: 305 KKQLDAAVAGDNCGLLLRSIKREQLKRGMIVAQPGTVAP 343
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 53.6 bits (123), Expect = 5e-08
Identities = 54/205 (26%), Positives = 85/205 (41%), Gaps = 1/205 (0%)
Frame = -2
Query: 1000 LPPARPXDKPLGFXLQXVYKIGGIGTVPXXRVETGVLKPGTIVVFAPXXITTXVXSVEMH 821
+PP +P KPL + VY+ TV RVE G ++ ++ V +V +
Sbjct: 395 VPPEKPYRKPLRLSIDDVYRSPRSVTV-TGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRN 453
Query: 820 XEAXQE-AVPGDNVGFNVKNVSVKELRRGYVAGDSXNNPPKGAADFTAQVIVXNHPGQIS 644
+ AV GD V + ++ V +LR G + + NP + F A++ + G I
Sbjct: 454 SDPSSTWAVAGDTVTLQLADIEVNQLRPGDIL-SNYENPVRRVRSFVAEIQTFDIHGPIL 512
Query: 643 NGYTPVLDCXXAXXACXFAEIKEKVDRRTGKXTEVNPKSIKXGDAAXVNLVPSKPXCVES 464
+G T VL + K+ K + + S K L P C+
Sbjct: 513 SGSTLVLHLGRT-----VTSVSLKIVTVNNKRSR-HIASRKRALVRISFLDGLFPLCL-- 564
Query: 463 XQEFPPLGRFAVRDMRQTVAVGVIK 389
+E P LGRF +R TVA G++K
Sbjct: 565 AEECPALGRFILRRSGDTVAAGIVK 589
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 8.6
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 351 VTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSXKDST 473
+ L P +S + TP+AT S+ + P GG D+T
Sbjct: 244 LNLKPRSSSNVNTEATPSATTTTSSKPKRDPFGGAKPVDNT 284
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,666
Number of Sequences: 5004
Number of extensions: 40033
Number of successful extensions: 69
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 613592056
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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