Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_A16
(1148 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 298 5e-81
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 298 5e-81
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 298 5e-81
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 88 1e-17
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 46 7e-05
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 46 7e-05
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 46 7e-05
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 36 0.054
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 32 0.88
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 32 0.88
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 30 2.7
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 298 bits (731), Expect = 5e-81
Identities = 141/206 (68%), Positives = 159/206 (77%)
Frame = -2
Query: 1000 LPPARPXDKPLGFXLQXVYKIGGIGTVPXXRVETGVLKPGTIVVFAPXXITTXVXSVEMH 821
+PP RP D+PL LQ VYKIGGIGTVP RVETG++KPG +V FAP +TT V SVEMH
Sbjct: 202 IPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMH 261
Query: 820 XEAXQEAVPGDNVGFNVKNVSVKELRRGYVAGDSXNNPPKGAADFTAQVIVXNHPGQISN 641
E+ EAVPGDNVGFNVKNVSVK++RRG V DS +P K A F AQVI+ NHPGQISN
Sbjct: 262 HESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISN 321
Query: 640 GYTPVLDCXXAXXACXFAEIKEKVDRRTGKXTEVNPKSIKXGDAAXVNLVPSKPXCVESX 461
GYTPVLDC A AC F E+KEKVDRRTGK E PK +K GDA V L+P+KP CVES
Sbjct: 322 GYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESF 381
Query: 460 QEFPPLGRFAVRDMRQTVAVGVIKAV 383
++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 382 TDYAPLGRFAVRDMRQTVAVGVIKSV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 298 bits (731), Expect = 5e-81
Identities = 141/206 (68%), Positives = 159/206 (77%)
Frame = -2
Query: 1000 LPPARPXDKPLGFXLQXVYKIGGIGTVPXXRVETGVLKPGTIVVFAPXXITTXVXSVEMH 821
+PP RP D+PL LQ VYKIGGIGTVP RVETG++KPG +V FAP +TT V SVEMH
Sbjct: 236 IPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMH 295
Query: 820 XEAXQEAVPGDNVGFNVKNVSVKELRRGYVAGDSXNNPPKGAADFTAQVIVXNHPGQISN 641
E+ EAVPGDNVGFNVKNVSVK++RRG V DS +P K A F AQVI+ NHPGQISN
Sbjct: 296 HESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISN 355
Query: 640 GYTPVLDCXXAXXACXFAEIKEKVDRRTGKXTEVNPKSIKXGDAAXVNLVPSKPXCVESX 461
GYTPVLDC A AC F E+KEKVDRRTGK E PK +K GDA V L+P+KP CVES
Sbjct: 356 GYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESF 415
Query: 460 QEFPPLGRFAVRDMRQTVAVGVIKAV 383
++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 416 TDYAPLGRFAVRDMRQTVAVGVIKSV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 298 bits (731), Expect = 5e-81
Identities = 141/206 (68%), Positives = 159/206 (77%)
Frame = -2
Query: 1000 LPPARPXDKPLGFXLQXVYKIGGIGTVPXXRVETGVLKPGTIVVFAPXXITTXVXSVEMH 821
+PP RP D+PL LQ VYKIGGIGTVP RVETG++KPG +V FAP +TT V SVEMH
Sbjct: 236 IPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMH 295
Query: 820 XEAXQEAVPGDNVGFNVKNVSVKELRRGYVAGDSXNNPPKGAADFTAQVIVXNHPGQISN 641
E+ EAVPGDNVGFNVKNVSVK++RRG V DS +P K A F AQVI+ NHPGQISN
Sbjct: 296 HESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISN 355
Query: 640 GYTPVLDCXXAXXACXFAEIKEKVDRRTGKXTEVNPKSIKXGDAAXVNLVPSKPXCVESX 461
GYTPVLDC A AC F E+KEKVDRRTGK E PK +K GDA V L+P+KP CVES
Sbjct: 356 GYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESF 415
Query: 460 QEFPPLGRFAVRDMRQTVAVGVIKAV 383
++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 416 TDYAPLGRFAVRDMRQTVAVGVIKSV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 87.8 bits (208), Expect = 1e-17
Identities = 54/188 (28%), Positives = 94/188 (50%), Gaps = 1/188 (0%)
Frame = -2
Query: 943 KIGGIGTVPXXRVETGVLKPGTIVVFAPXXITTXVXSVEMHXEAXQEAVPGDNVGFNVKN 764
K +GTV ++E+G ++ G +V P V + + V GDN+ F +K
Sbjct: 347 KYSEMGTVIIGKMESGCVQKGDTLVVMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKG 406
Query: 763 VSVKELRRGYVAGDSXNNPPKGAADFTAQVIVXNHPGQISNGYTPVLDCXXAXXACXFAE 584
+ EL+ G++ S ++ K F A+V+V H I++GY+ VL A
Sbjct: 407 IEENELQGGFII-CSPDSLAKTGRVFDAEVLVLEHRSIIASGYSCVLHIQSAVEEVTVKG 465
Query: 583 IKEKVDRRTGKXTEVNPKSIKXGDAAXVNLVPSKPXCVESXQEFPPLGRFAVRDMRQTVA 404
+ +D++TG+ + K +K + + L +P +E +E+P LGRF +RD +T+A
Sbjct: 466 VIATIDKKTGE--KKRAKFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIA 523
Query: 403 VG-VIKAV 383
+G V+K V
Sbjct: 524 IGKVLKVV 531
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor Tu
homologueprecursor protein.
Length = 495
Score = 45.6 bits (103), Expect = 7e-05
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Frame = -2
Query: 1000 LPPARPXDKPLGFXLQXVYKIGGIGTVPXXRVETGVLKPG-TIVVFAPXXITTXVXSV-- 830
+P + ++P+ F + VY I G GTV ++E G+LK G I + T V SV
Sbjct: 243 IPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVIS 301
Query: 829 --EMHXEAXQEAVPGDNVGFNVKNVSVKELRRGYV 731
E + +A PGD +G ++ + K++RRG V
Sbjct: 302 GLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor Tu
homologueprecursor protein.
Length = 496
Score = 45.6 bits (103), Expect = 7e-05
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Frame = -2
Query: 1000 LPPARPXDKPLGFXLQXVYKIGGIGTVPXXRVETGVLKPG-TIVVFAPXXITTXVXSV-- 830
+P + ++P+ F + VY I G GTV ++E G+LK G I + T V SV
Sbjct: 244 IPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVIS 302
Query: 829 --EMHXEAXQEAVPGDNVGFNVKNVSVKELRRGYV 731
E + +A PGD +G ++ + K++RRG V
Sbjct: 303 GLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 45.6 bits (103), Expect = 7e-05
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Frame = -2
Query: 1000 LPPARPXDKPLGFXLQXVYKIGGIGTVPXXRVETGVLKPG-TIVVFAPXXITTXVXSV-- 830
+P + ++P+ F + VY I G GTV ++E G+LK G I + T V SV
Sbjct: 244 IPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVIS 302
Query: 829 --EMHXEAXQEAVPGDNVGFNVKNVSVKELRRGYV 731
E + +A PGD +G ++ + K++RRG V
Sbjct: 303 GLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 44.0 bits (99), Expect = 2e-04
Identities = 38/205 (18%), Positives = 76/205 (37%), Gaps = 1/205 (0%)
Frame = -2
Query: 994 PARPXDKPLGFXLQXVYKIGGIGTVPXXRVETGVLKPGTIVVFAPXXITTXVXSVEMHXE 815
P P D PL + V K+ V ++E+G ++ V+ +T + +
Sbjct: 385 PQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDD-KVYIMSSVTAATVKECANND 443
Query: 814 AXQEAVPGDNVGFNVKNVSVKE-LRRGYVAGDSXNNPPKGAADFTAQVIVXNHPGQISNG 638
+ GD + ++ E ++ G V + + + F +++ I G
Sbjct: 444 GSRHCFAGDYILLTLQGTFEPESIQTGSVVVRAGPDTLIPSKKFEVRLVAFEIAMPIIKG 503
Query: 637 YTPVLDCXXAXXACXFAEIKEKVDRRTGKXTEVNPKSIKXGDAAXVNLVPSKPXCVESXQ 458
L C F + +++ G+ + P+ I G +A V + +E+
Sbjct: 504 AKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFT 563
Query: 457 EFPPLGRFAVRDMRQTVAVGVIKAV 383
LGR R T+A G+++ V
Sbjct: 564 SCRALGRVTFRAGGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical protein
K07A12.4a protein.
Length = 610
Score = 44.0 bits (99), Expect = 2e-04
Identities = 38/205 (18%), Positives = 76/205 (37%), Gaps = 1/205 (0%)
Frame = -2
Query: 994 PARPXDKPLGFXLQXVYKIGGIGTVPXXRVETGVLKPGTIVVFAPXXITTXVXSVEMHXE 815
P P D PL + V K+ V ++E+G ++ V+ +T + +
Sbjct: 403 PQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDD-KVYIMSSVTAATVKECANND 461
Query: 814 AXQEAVPGDNVGFNVKNVSVKE-LRRGYVAGDSXNNPPKGAADFTAQVIVXNHPGQISNG 638
+ GD + ++ E ++ G V + + + F +++ I G
Sbjct: 462 GSRHCFAGDYILLTLQGTFEPESIQTGSVVVRAGPDTLIPSKKFEVRLVAFEIAMPIIKG 521
Query: 637 YTPVLDCXXAXXACXFAEIKEKVDRRTGKXTEVNPKSIKXGDAAXVNLVPSKPXCVESXQ 458
L C F + +++ G+ + P+ I G +A V + +E+
Sbjct: 522 AKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFT 581
Query: 457 EFPPLGRFAVRDMRQTVAVGVIKAV 383
LGR R T+A G+++ V
Sbjct: 582 SCRALGRVTFRAGGNTIAAGIVEKV 606
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 35.9 bits (79), Expect = 0.054
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 4/109 (3%)
Frame = -2
Query: 973 PLGFXLQXVYKIGGIGTVPXXRVETGVLKPGTIVVFAPXXITTX----VXSVEMHXEAXQ 806
P F ++ +Y + +G V + G L G V+ P T V S+ +A
Sbjct: 402 PAFFTIEELYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRSRQAVG 461
Query: 805 EAVPGDNVGFNVKNVSVKELRRGYVAGDSXNNPPKGAADFTAQVIVXNH 659
PG+ ++ LRRG V + + PP +FTA +++ H
Sbjct: 462 CVNPGEAASISLNLPDGVSLRRGMVLAEIDHQPPV-CYEFTANLLLLCH 509
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 31.9 bits (69), Expect = 0.88
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = -2
Query: 940 IGGIGTVPXXRVETGVLKPGTIVVFAPXXIT--TXVXSVEMHXEAXQEAVPGDNVGFNVK 767
I G GTV +E GVLK G V T T +++ ++ +E GD+ G +
Sbjct: 250 ITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGDHCGVLCR 309
Query: 766 NVSVKELRRGYVAG 725
V ++RG AG
Sbjct: 310 GVKGDTVKRGMWAG 323
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 31.9 bits (69), Expect = 0.88
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = -2
Query: 940 IGGIGTVPXXRVETGVLKPGTIVVFAPXXIT--TXVXSVEMHXEAXQEAVPGDNVGFNVK 767
I G GTV +E GVLK G V T T +++ ++ +E GD+ G +
Sbjct: 250 ITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGDHCGVLCR 309
Query: 766 NVSVKELRRGYVAG 725
V ++RG AG
Sbjct: 310 GVKGDTVKRGMWAG 323
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 30.3 bits (65), Expect = 2.7
Identities = 23/82 (28%), Positives = 32/82 (39%)
Frame = +3
Query: 675 T*AVKSAAPLGGLFXESPAT*PRRNSLTDTFFTLKPTLSPGTASWXASXCISTDXTXVVM 854
T A +AAP GGLF + T P T F T +P TA+ + T +
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAATLGQTPSTVSATPSLP 527
Query: 855 XXGAXTTMVPGFNTPVSTLXXG 920
+ T+ +P TL G
Sbjct: 528 TTTSTTSTLPKPAEATPTLGLG 549
Score = 28.7 bits (61), Expect = 8.2
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Frame = +3
Query: 681 AVKSAAPLGGLFXE-SPAT*PRRNSLTDTFF---TLKPTLSPGTASWXASXCISTDXTXV 848
A K AAP GGLF +PAT + T F T P+ +P T + T
Sbjct: 251 APKPAAPSGGLFGSTAPATTAATTTATSGLFGAPTSAPSSAPATGGLFGASTAPAAATGG 310
Query: 849 VMXXGAXTTMVP 884
+ GA + P
Sbjct: 311 LFSIGAASASTP 322
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,637,190
Number of Sequences: 27780
Number of extensions: 265290
Number of successful extensions: 443
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3119902942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -