Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_A16
         (1148 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   353   2e-99
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   345   6e-97
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...   202   6e-54
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   158   7e-41

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
            F2 protein.
          Length = 461

 Score =  353 bits (867), Expect = 2e-99
 Identities = 171/212 (80%), Positives = 176/212 (83%)
 Frame = -2

Query: 1006 AXLPPARPXDKPLGFXLQXVYKIGGIGTVPXXRVETGVLKPGTIVVFAPXXITTXVXSVE 827
            A LPP RP DK L   LQ VYKIGGIGTVP  RVETGVLKPG +V FAP  +TT V SVE
Sbjct: 234  AILPPTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVE 293

Query: 826  MHXEAXQEAVPGDNVGFNVKNVSVKELRRGYVAGDSXNNPPKGAADFTAQVIVXNHPGQI 647
            MH EA QEAVPGDNVGFNVKNVSVKELRRGYVAGDS NNPPKGAADFTAQVIV NHPGQI
Sbjct: 294  MHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQI 353

Query: 646  SNGYTPVLDCXXAXXACXFAEIKEKVDRRTGKXTEVNPKSIKXGDAAXVNLVPSKPXCVE 467
            SNGYTPVLDC  A  AC FA+IKEK DRR GK TE NPKSIK GDAA V LVPSKP C E
Sbjct: 354  SNGYTPVLDCHTAHIACKFADIKEKCDRRNGKTTEENPKSIKSGDAAIVMLVPSKPMCAE 413

Query: 466  SXQEFPPLGRFAVRDMRQTVAVGVIKAVNFKE 371
            + QEFPPLGRFAVRDMRQTVAVGVIKAV FK+
Sbjct: 414  AFQEFPPLGRFAVRDMRQTVAVGVIKAVTFKD 445


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
            protein.
          Length = 461

 Score =  345 bits (847), Expect = 6e-97
 Identities = 165/212 (77%), Positives = 176/212 (83%)
 Frame = -2

Query: 1006 AXLPPARPXDKPLGFXLQXVYKIGGIGTVPXXRVETGVLKPGTIVVFAPXXITTXVXSVE 827
            A LPP+RP DK L   LQ VYKIGGIGTVP  RVETG+LKPG +V FAP  +TT V SVE
Sbjct: 234  AILPPSRPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGMLVTFAPAALTTEVKSVE 293

Query: 826  MHXEAXQEAVPGDNVGFNVKNVSVKELRRGYVAGDSXNNPPKGAADFTAQVIVXNHPGQI 647
            MH EA  EA+PGDNVGFNVKN+SVKELRRGYVAGDS N PP+GAADFTAQVIV NHPGQI
Sbjct: 294  MHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQI 353

Query: 646  SNGYTPVLDCXXAXXACXFAEIKEKVDRRTGKXTEVNPKSIKXGDAAXVNLVPSKPXCVE 467
            SNGYTPVLDC  A  AC FAEIKEK DRRTGK TE NPKSIK GDAA V L P+KP CVE
Sbjct: 354  SNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVE 413

Query: 466  SXQEFPPLGRFAVRDMRQTVAVGVIKAVNFKE 371
            + QEFPPLGRFAVRDMRQTVAVGVIK+V FK+
Sbjct: 414  AFQEFPPLGRFAVRDMRQTVAVGVIKSVTFKD 445



 Score = 22.2 bits (45), Expect = 8.8
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 786 LSPGTASWXASXCISTDXTXVVMXXGAXTTMVPGFN 893
           L PG     A   ++T+   V M   A T  +PG N
Sbjct: 272 LKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDN 307


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score =  202 bits (492), Expect = 6e-54
 Identities = 96/118 (81%), Positives = 100/118 (84%)
 Frame = -2

Query: 835 SVEMHXEAXQEAVPGDNVGFNVKNVSVKELRRGYVAGDSXNNPPKGAADFTAQVIVXNHP 656
           SVEMH EA  EA+PGDNVGFNVKN+SVKELRRGYVAGDS N PP+GAADFTAQVIV NHP
Sbjct: 2   SVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHP 61

Query: 655 GQISNGYTPVLDCXXAXXACXFAEIKEKVDRRTGKXTEVNPKSIKXGDAAXVNLVPSK 482
           GQISNGYTPVLDC  A  AC FAEIKEK DRRTGK TE NPKSIK GDAA V L P+K
Sbjct: 62  GQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTK 119


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-alpha
            protein.
          Length = 274

 Score =  158 bits (384), Expect = 7e-41
 Identities = 77/98 (78%), Positives = 79/98 (80%)
 Frame = -2

Query: 1006 AXLPPARPXDKPLGFXLQXVYKIGGIGTVPXXRVETGVLKPGTIVVFAPXXITTXVXSVE 827
            A LPP RP DK L   LQ VYKIGGIGTVP  RVETGVLKPG +V FAP  +TT V SVE
Sbjct: 177  AILPPTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVE 236

Query: 826  MHXEAXQEAVPGDNVGFNVKNVSVKELRRGYVAGDSXN 713
            MH EA QEAVPGDNVGFNVKNVSVKELRRGYVAGDS N
Sbjct: 237  MHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,727
Number of Sequences: 438
Number of extensions: 3181
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 38921823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)