Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_A15
(1174 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 289 5e-79
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 287 2e-78
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 3.8
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 27 5.0
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 6.6
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 27 6.6
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 8.8
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch... 26 8.8
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 289 bits (709), Expect = 5e-79
Identities = 139/281 (49%), Positives = 185/281 (65%), Gaps = 2/281 (0%)
Frame = +2
Query: 95 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 274
M F+K VK+ YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60
Query: 275 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXX 454
TCQ+ SR+ GD+++ A+S ELPRYG+K GL N+ AAY+TG
Sbjct: 61 TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYE 120
Query: 455 XXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRF 634
E +++GP F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS RF
Sbjct: 121 GVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRF 180
Query: 635 PGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIY 814
PG+D E+++ + E R +I+G HVAEYM L DDE+ +++QFS I G+ +D +E IY
Sbjct: 181 PGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIY 240
Query: 815 KKAHEAIRADPSHKK--KELKKDSVKQKRWNKRKLTLAERK 931
+A+ IR DPS +K K+ + ++ +RKLT ERK
Sbjct: 241 AEAYAKIREDPSFQKSGKDAAAFKAESLKYTQRKLTAEERK 281
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 287 bits (705), Expect = 2e-78
Identities = 139/281 (49%), Positives = 184/281 (65%), Gaps = 2/281 (0%)
Frame = +2
Query: 95 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 274
M F+K VK+ YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60
Query: 275 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXX 454
TCQ+ SR+ GD+++ A+S ELPRYG+K GL N+ AAY+TG
Sbjct: 61 TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYE 120
Query: 455 XXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRF 634
E +++GP F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS RF
Sbjct: 121 GVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRF 180
Query: 635 PGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIY 814
PG+D E+++ + E R +I+G HVAEYM L DDE+ +++QFS I G+ +D +E IY
Sbjct: 181 PGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIY 240
Query: 815 KKAHEAIRADPSHKK--KELKKDSVKQKRWNKRKLTLAERK 931
+A+ IR DPS +K K+ + + +RKLT ERK
Sbjct: 241 AEAYAKIREDPSFQKSGKDAAAFKAESLKHTQRKLTAEERK 281
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +2
Query: 731 QDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQK 892
+++++S ++ +K ++ V +KK +E IR+D LK+D K++
Sbjct: 1023 KEEKESSSKELAKQLEDAVREKDSALSFKKDYEKIRSDADRVITSLKEDIEKER 1076
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 425 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 333
EAV + + D + L +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 6.6
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 797 AIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRK 910
++E+ K EA + + +KKE KK+ K+K+ K K
Sbjct: 430 SVESSEKDEDEAAKKEEKRRKKEAKKEK-KEKKEKKEK 466
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 26.6 bits (56), Expect = 6.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 827 EAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKTESS 943
E I PS K+K+ KK+ K+K KR A + + S
Sbjct: 452 ETISEKPSKKEKKDKKEKKKEKSKKKRSADDASEEVKKS 490
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 8.8
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 788 TADAIEAIYKKAHEAIRADPSHKKKELK 871
TA IEA+YKKA+ I+ D +H K LK
Sbjct: 174 TAQLIEAVYKKAN--IK-DAAHDSKNLK 198
>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 8.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 987 FRLSLQXXDEGSLLXLDSVFLSANVSLRLFQRFCL 883
FR+ L +G+ L ++ + S NVS RFC+
Sbjct: 219 FRIILHYPAKGNKLPINVILSSTNVSCGCEMRFCI 253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,995,110
Number of Sequences: 5004
Number of extensions: 81645
Number of successful extensions: 287
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 629529512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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