Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_A15
(1174 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 308 4e-84
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 307 1e-83
04_04_1146 + 31249488-31249722,31250145-31250236,31251158-312512... 29 9.4
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444... 29 9.4
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 308 bits (757), Expect = 4e-84
Identities = 148/278 (53%), Positives = 191/278 (68%)
Frame = +2
Query: 98 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 277
GFVK K YFKR+QVKFKRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T
Sbjct: 3 GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59
Query: 278 CQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXX 457
Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAY TG
Sbjct: 60 AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEG 119
Query: 458 XXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFP 637
+Y VEP D FR LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF
Sbjct: 120 NVEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 178
Query: 638 GYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYK 817
G+ + K+ ++++HR +I+G HVA+YMRS+ +++ + F+ FS+Y+K G+ AD +E++YK
Sbjct: 179 GFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYK 238
Query: 818 KAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERK 931
K H AIRADP+ K KK+ KR+N +KLT +RK
Sbjct: 239 KVHAAIRADPT-MAKSTKKEPATHKRYNLKKLTYEQRK 275
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 307 bits (754), Expect = 1e-83
Identities = 148/278 (53%), Positives = 190/278 (68%)
Frame = +2
Query: 98 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 277
GFVK K Y KR+QVKFKRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T
Sbjct: 3 GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59
Query: 278 CQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXX 457
Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAY TG
Sbjct: 60 AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEG 119
Query: 458 XXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFP 637
+Y VEP D FR LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF
Sbjct: 120 NIEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 178
Query: 638 GYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYK 817
G+ + K+ ++++HR +I+G HVA+YMRS+ +++ + F+ FS+Y+K G+ AD +EA+YK
Sbjct: 179 GFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYK 238
Query: 818 KAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERK 931
K H AIRADP+ K KK+ KR+N +KLT +RK
Sbjct: 239 KVHAAIRADPT-MAKSTKKEPATHKRYNLKKLTYEQRK 275
>04_04_1146 +
31249488-31249722,31250145-31250236,31251158-31251209,
31251377-31251477,31251587-31252020,31252453-31252507,
31252614-31252667,31252774-31253190
Length = 479
Score = 28.7 bits (61), Expect = 9.4
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Frame = +2
Query: 593 VDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRS-LEQDDEDSFKRQFSK 769
VDG +VP + G DA ++ A HR + HV ++ L + D F +
Sbjct: 329 VDGDGSVPVESAKADGLDAVARVGVAADHRGIVCDRHVFRIIQHWLHAGEPDPFYDPLND 388
Query: 770 YIKLGVTADAIEAIYKKAHE--AIRAD---PSHKKKELKK 874
Y+ L TA IE ++K + ++R D SH+ E K+
Sbjct: 389 YVIL-PTAFEIEKYHEKHGDITSVREDWEIISHRDDESKR 427
>02_01_0598 +
4440018-4440070,4440627-4440693,4440794-4440926,
4441075-4441120,4442470-4442521,4442601-4442753,
4443338-4443457,4443549-4443714,4443822-4443934,
4444049-4444120,4444992-4445213,4445270-4445317,
4445639-4445697,4445809-4445887,4445982-4446119,
4446327-4446551,4446643-4447430,4447548-4447723,
4447911-4448169,4448646-4448707,4451055-4451212,
4451618-4451743,4452197-4452260,4452386-4452494,
4452607-4452760,4453055-4453178,4453257-4453333,
4453442-4453494,4453673-4453727,4453833-4454021
Length = 1379
Score = 28.7 bits (61), Expect = 9.4
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 779 LGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNK 904
LG++ A+EA YK+++E+ A+P KK + +W++
Sbjct: 748 LGLSHYAMEAGYKRSNESTPAEPVPSKKPKVDPVLPASKWSR 789
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,287,010
Number of Sequences: 37544
Number of extensions: 528003
Number of successful extensions: 1349
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3584899172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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