Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_A14
         (1228 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   3.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   3.1  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    23   7.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   9.5  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
 Frame = +3

Query: 459 HYFDRFRGDFE-STFSVPVSPQKPNQAE-----TTV----EKPLSSWPLPGA 584
           +Y +RF G++E     +P S  + +        TTV    E+PL S PLPGA
Sbjct: 432 YYGNRFSGEYEIPAHGLPPSATRYDLGAVATVGTTVAPCFEEPLPSLPLPGA 483


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 912  KPPPPPPXP 886
            +PPPPPP P
Sbjct: 1354 QPPPPPPPP 1362


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 533 LVRLLRGYRNGESTFKISSKSVEV 462
           +++LLR ++NG   F +  K +E+
Sbjct: 72  IMKLLRTFKNGNFDFDMIVKQLEI 95


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 912 KPPPPPPXP 886
           KP PPPP P
Sbjct: 340 KPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,633
Number of Sequences: 438
Number of extensions: 4740
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 41781924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)