Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_A13
(1283 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 33 0.58
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 31 1.3
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 30 4.1
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 30 4.1
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 30 4.1
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 5.4
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 25 5.7
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 29 7.1
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 29 7.1
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 9.4
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 32.7 bits (71), Expect = 0.58
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -1
Query: 497 PPPPXXXFFXXXPPXXPPXPPP 432
PPPP F PP PP PPP
Sbjct: 56 PPPPCPAQFCPPPPICPPPPPP 77
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 31.5 bits (68), Expect = 1.3
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -1
Query: 497 PPPPXXXFFXXXPPXXPPXPPP 432
PPPP PP PP PPP
Sbjct: 72 PPPPLISILQQAPPPPPPPPPP 93
Score = 29.5 bits (63), Expect = 5.4
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 499 PPPPXXXXFLXXXRPXXPPPPP 434
PPPP L P PPPPP
Sbjct: 71 PPPPPLISILQQAPPPPPPPPP 92
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 29.9 bits (64), Expect = 4.1
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -1
Query: 497 PPPPXXXFFXXXPPXXPPXPPP 432
PPPP PP PP PPP
Sbjct: 235 PPPPLPPVGAGAPPPPPPPPPP 256
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 29.9 bits (64), Expect = 4.1
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -1
Query: 497 PPPPXXXFFXXXPPXXPPXPPP 432
PPPP PP PP PPP
Sbjct: 221 PPPPLPPVGAGAPPPPPPPPPP 242
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 29.9 bits (64), Expect = 4.1
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -1
Query: 497 PPPPXXXFFXXXPPXXPPXPPP 432
PPPP PP PP PPP
Sbjct: 221 PPPPLPPVGAGAPPPPPPPPPP 242
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.5 bits (63), Expect = 5.4
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -1
Query: 497 PPPPXXXFFXXXPPXXPPXPP 435
PPPP + PP PP PP
Sbjct: 133 PPPPPPPHYPPPPPHYPPPPP 153
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 25.0 bits (52), Expect(2) = 5.7
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = -1
Query: 497 PPPPXXXFFXXXPPXXPPXP 438
PPPP PP PP P
Sbjct: 539 PPPPPVGMANGGPPPPPPLP 558
Score = 22.6 bits (46), Expect(2) = 5.7
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -1
Query: 461 PPXXPPXPPP 432
PP PP PPP
Sbjct: 576 PPPPPPPPPP 585
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 29.1 bits (62), Expect = 7.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 499 PPPPXXXXFLXXXRPXXPPPPP 434
PPPP + +P PPPPP
Sbjct: 157 PPPPPPPVSVPSSKPTPPPPPP 178
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 29.1 bits (62), Expect = 7.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 499 PPPPXXXXFLXXXRPXXPPPPP 434
PPPP + +P PPPPP
Sbjct: 157 PPPPPPPVSVPSSKPTPPPPPP 178
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 28.7 bits (61), Expect = 9.4
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -1
Query: 497 PPPPXXXFFXXXPPXXPPXPPP 432
PPP F PP PP PPP
Sbjct: 47 PPPICPPQFCPPPPMCPPPPPP 68
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,976,457
Number of Sequences: 27780
Number of extensions: 80907
Number of successful extensions: 1023
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3589453552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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