Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_A11
         (1186 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    80   5e-16
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    47   6e-06
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    38   0.003
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    31   0.24 
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    29   1.7  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    28   2.9  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    28   2.9  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    28   2.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.9  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    26   8.9  

>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 80.2 bits (189), Expect = 5e-16
 Identities = 41/107 (38%), Positives = 71/107 (66%), Gaps = 4/107 (3%)
 Frame = +2

Query: 521 YIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSD 700
           Y++++ +R  TF+KRK GI KKA EL+ LTG++VM+LV SETG V+TF+T KL+ ++ S 
Sbjct: 27  YLEDRQKRQNTFTKRKAGIFKKANELALLTGSEVMVLVVSETGLVHTFSTPKLENVVKSP 86

Query: 701 SGKRLI-QTCLNS---PDPPTTSEQRMAATGFEEXELTYNVVXEDMK 829
            G++LI ++ +N+    +    S+ + ++    + E  Y +  E+M+
Sbjct: 87  EGQKLITESLINATTDQNESQASQAKQSSAQLSDSESGYPLDHEEMR 133


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 46.8 bits (106), Expect = 6e-06
 Identities = 24/62 (38%), Positives = 33/62 (53%)
 Frame = +2

Query: 497 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRK 676
           GR KI +  I +   R  TF KRK G+ KKAYEL+ L   +V + V    G ++ F +  
Sbjct: 2   GRKKISIAPITDDRSRSVTFVKRKQGLYKKAYELAVLADCEVAVTVIDRKGRLHVFCSSD 61

Query: 677 LQ 682
            Q
Sbjct: 62  YQ 63


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
 Frame = +2

Query: 470 PPSNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLV--ASE 643
           PPS    +  R    ++ I +   +  TF++R+ G++KKA+ELS L   +V++++  +  
Sbjct: 6   PPSTAPSSPRR---SIQRISDAKNKALTFNRRRLGLIKKAHELSVLCDAKVVVMIFDSKN 62

Query: 644 TGHVYT 661
             HVY+
Sbjct: 63  ACHVYS 68


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 31.5 bits (68), Expect = 0.24
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +2

Query: 374 YDDRPSQSVPLDHCPMPDIADDGYASLQPKK---SPPSNGKKTKGRVKIKMEYIDNKLRR 544
           + D+ + + PL     PD+A     SL   K   SP +N K+TK    I+    ++K RR
Sbjct: 214 FADQNAFTNPLSTFASPDLASVSSPSLSSYKGAQSPNANSKRTKATSAIRTAAEEDKRRR 273

Query: 545 YTTFSKR 565
            T  S R
Sbjct: 274 NTAASAR 280


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +3

Query: 258  TCTARAGLRARSA-VLAPCGPACN---LAQCPGLELNVH 362
            T     G R+ S  V++P  PAC+    A+CP L  N H
Sbjct: 1101 TTVPATGTRSGSVIVVSPTAPACSSTPFAECPNLNFNFH 1139


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 683 AEVSASRTYTRAPSPTRPATSLVSP 609
           A  S+SR Y   P+PT PA+S  SP
Sbjct: 244 ATSSSSRLYPSRPAPTPPASSSSSP 268


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 293 GGAGPLRPGMQPCPMPRAG 349
           G   P+ PGM P P P AG
Sbjct: 134 GALAPISPGMSPAPQPCAG 152


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 273 AGLRARSAVLAPCGPACNLAQCPGLELNVHRTSATMIDHHKA 398
           A L + S     CG AC +AQ    +LN+HR  +T ++  KA
Sbjct: 264 AYLSSSSLCRTLCGQACLMAQ----QLNLHRKQSTDVEPEKA 301


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = +2

Query: 572 GIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGKRLIQTCLNSPDPPT 751
           G  + A   S +TG Q   ++   TG +    T   QPMI   +G +   T    P  P 
Sbjct: 403 GFQQAAGIPSQITGFQPQAMMPQRTG-MQPQMTGFQQPMIPQRTGMQPQMTGFQQPMMPQ 461

Query: 752 TSEQRMAATGFEE 790
            +  +   TGF++
Sbjct: 462 RTGLQPQMTGFQQ 474


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 407 DHCPMPDIADDGYASLQPKKSPPSNGK 487
           D CP  D A D     +  + P SNGK
Sbjct: 62  DQCPQSDTAKDKKTEFKQDEVPNSNGK 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,975,733
Number of Sequences: 5004
Number of extensions: 76723
Number of successful extensions: 203
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 637498240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)