Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_A11
(1186 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75710-1|CAB00023.1| 327|Caenorhabditis elegans Hypothetical pr... 165 7e-41
Z79758-1|CAB61037.1| 340|Caenorhabditis elegans Hypothetical pr... 56 6e-08
U36199-1|AAA79337.1| 340|Caenorhabditis elegans CeMEF-2 protein. 56 6e-08
U36198-1|AAA79336.1| 340|Caenorhabditis elegans CeMef-2 protein. 56 6e-08
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 33 0.30
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 33 0.30
AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical ... 31 2.1
AB006659-1|BAA21847.1| 655|Caenorhabditis elegans E6-AP ubiquit... 31 2.1
Z78200-8|CAB01583.2| 368|Caenorhabditis elegans Hypothetical pr... 30 2.8
Z36948-2|CAA85410.1| 268|Caenorhabditis elegans Hypothetical pr... 30 3.7
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 30 3.7
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 30 3.7
U14635-8|AAK84492.1| 307|Caenorhabditis elegans Collagen protei... 30 3.7
L15418-1|AAA17445.1| 307|Caenorhabditis elegans col-36 collagen... 30 3.7
Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical p... 29 6.4
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 6.4
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 29 8.5
AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen prot... 29 8.5
>Z75710-1|CAB00023.1| 327|Caenorhabditis elegans Hypothetical
protein D1081.2 protein.
Length = 327
Score = 165 bits (400), Expect = 7e-41
Identities = 77/87 (88%), Positives = 85/87 (97%)
Frame = +2
Query: 479 NGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVY 658
NGKKTKGRVKIKMEYI+NKLRRYTTFSKRKTGIMKKA+ELSTLTGTQVMLLVASETGHVY
Sbjct: 40 NGKKTKGRVKIKMEYINNKLRRYTTFSKRKTGIMKKAFELSTLTGTQVMLLVASETGHVY 99
Query: 659 TFATRKLQPMITSDSGKRLIQTCLNSP 739
T+AT KLQPMI+SD+GK +IQ+CLN+P
Sbjct: 100 TYATPKLQPMISSDTGKAMIQSCLNAP 126
>Z79758-1|CAB61037.1| 340|Caenorhabditis elegans Hypothetical
protein W10D5.1 protein.
Length = 340
Score = 55.6 bits (128), Expect = 6e-08
Identities = 25/65 (38%), Positives = 42/65 (64%)
Frame = +2
Query: 497 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRK 676
GR KI++ I ++ R TF+KRK G+MKKAYELS L ++ L+V + T ++ +A+
Sbjct: 2 GRKKIQITRIQDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIVFNSTNKLFQYASTD 61
Query: 677 LQPMI 691
+ ++
Sbjct: 62 MDKVL 66
>U36199-1|AAA79337.1| 340|Caenorhabditis elegans CeMEF-2 protein.
Length = 340
Score = 55.6 bits (128), Expect = 6e-08
Identities = 25/65 (38%), Positives = 42/65 (64%)
Frame = +2
Query: 497 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRK 676
GR KI++ I ++ R TF+KRK G+MKKAYELS L ++ L+V + T ++ +A+
Sbjct: 2 GRKKIQITRIQDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIVFNSTNKLFQYASTD 61
Query: 677 LQPMI 691
+ ++
Sbjct: 62 MDKVL 66
>U36198-1|AAA79336.1| 340|Caenorhabditis elegans CeMef-2 protein.
Length = 340
Score = 55.6 bits (128), Expect = 6e-08
Identities = 25/65 (38%), Positives = 42/65 (64%)
Frame = +2
Query: 497 GRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRK 676
GR KI++ I ++ R TF+KRK G+MKKAYELS L ++ L+V + T ++ +A+
Sbjct: 2 GRKKIQITRIQDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIVFNSTNKLFQYASTD 61
Query: 677 LQPMI 691
+ ++
Sbjct: 62 MDKVL 66
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 33.5 bits (73), Expect = 0.30
Identities = 22/66 (33%), Positives = 26/66 (39%)
Frame = +2
Query: 221 GPSYMGLLGEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSV 400
GP + MP M S PP + GA P G P P P GV P P +
Sbjct: 132 GPPPPSMAYGMPPMPSGMMPPRGMPGAYPPPRGYPPAPAP--GVYMPPPGMPGAYPPPRM 189
Query: 401 PLDHCP 418
P+ H P
Sbjct: 190 PIGHGP 195
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 33.5 bits (73), Expect = 0.30
Identities = 22/66 (33%), Positives = 26/66 (39%)
Frame = +2
Query: 221 GPSYMGLLGEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSV 400
GP + MP M S PP + GA P G P P P GV P P +
Sbjct: 132 GPPPPSMAYGMPPMPSGMMPPRGMPGAYPPPRGYPPAPAP--GVYMPPPGMPGAYPPPRM 189
Query: 401 PLDHCP 418
P+ H P
Sbjct: 190 PIGHGP 195
>AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical
protein Y39A1C.2 protein.
Length = 1066
Score = 30.7 bits (66), Expect = 2.1
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 728 GTSGSAFSQNRT*SWAEVSASRTYTRAPSPTRPAT 624
GTSGS F+ + W VSAS + PS AT
Sbjct: 496 GTSGSIFNSSNAEQWGPVSASLQSLKRPSSPHTAT 530
>AB006659-1|BAA21847.1| 655|Caenorhabditis elegans E6-AP
ubiquitin-protein ligase protein.
Length = 655
Score = 30.7 bits (66), Expect = 2.1
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 728 GTSGSAFSQNRT*SWAEVSASRTYTRAPSPTRPAT 624
GTSGS F+ + W VSAS + PS AT
Sbjct: 85 GTSGSIFNSSNAEQWGPVSASLQSLKRPSSPHTAT 119
>Z78200-8|CAB01583.2| 368|Caenorhabditis elegans Hypothetical
protein T04H1.6 protein.
Length = 368
Score = 30.3 bits (65), Expect = 2.8
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 278 PPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMPDIADD 439
P LGG+G + PG P PMP+ + P ++P S +++C + DD
Sbjct: 89 PVFPLGGSGIVEPGTIPPPMPQ--TQAP------EKPDNSYAINYCDKREFPDD 134
>Z36948-2|CAA85410.1| 268|Caenorhabditis elegans Hypothetical
protein D2089.3 protein.
Length = 268
Score = 29.9 bits (64), Expect = 3.7
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +2
Query: 626 LLVASETGHVYTFATRKLQPMITSDSGKRLIQTCLNSPDPPTTSEQRMAATGFEEXEL 799
L V ET ++T ++ +P ++ +N P P+TSE A T E+ +L
Sbjct: 98 LCVIYETVSIHTDLEKQRKPASSNSLPSDFPDISMNEPQQPSTSENATAVTSEEQPQL 155
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 29.9 bits (64), Expect = 3.7
Identities = 21/80 (26%), Positives = 38/80 (47%)
Frame = +2
Query: 542 RYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYTFATRKLQPMITSDSGKRLIQ 721
++TT SK +G + ++ TG+ V + +S +G V T + QP +++ G
Sbjct: 1444 QHTTMSKASSGSTSPS--TNSQTGSTVTMGSSSTSG-VSTSSASSTQPQMSTSQGSSAGS 1500
Query: 722 TCLNSPDPPTTSEQRMAATG 781
T +S P S ++TG
Sbjct: 1501 TVASSTASPAASSTAPSSTG 1520
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 29.9 bits (64), Expect = 3.7
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +2
Query: 245 GEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYD-DRPSQSVPLDH 412
GE D Y+A A GG GP + P P P A + P Q + P P +H
Sbjct: 4 GEDADKYAASVAEVAHGGGGPKKDDQVP-PAPDASMPTPQQQQQQPNLPPPQQPYEH 59
Score = 29.5 bits (63), Expect = 4.9
Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Frame = +2
Query: 278 PPSALGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPS------QSVPLDHCPMPDIADD 439
PP P P P+P +++ DD+PS Q P H P P
Sbjct: 182 PPKEGPNGNPATPSSSSQPIPSPSASSIAEESLDDKPSGTKMPAQPPPQQHPPPPQ--PQ 239
Query: 440 GYASLQPKKSPPS 478
S P ++PPS
Sbjct: 240 QIMSPMPPQAPPS 252
>U14635-8|AAK84492.1| 307|Caenorhabditis elegans Collagen protein
36 protein.
Length = 307
Score = 29.9 bits (64), Expect = 3.7
Identities = 17/45 (37%), Positives = 18/45 (40%)
Frame = +2
Query: 290 LGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMP 424
+GG GP PG P P G P Q P DHCP P
Sbjct: 259 IGGQGP--PGDAGGPGPVGGQGPPGPQGPQGPPGDEGSCDHCPEP 301
>L15418-1|AAA17445.1| 307|Caenorhabditis elegans col-36 collagen
protein.
Length = 307
Score = 29.9 bits (64), Expect = 3.7
Identities = 17/45 (37%), Positives = 18/45 (40%)
Frame = +2
Query: 290 LGGAGPLRPGMQPCPMPRAGVKRPSDQCYDDRPSQSVPLDHCPMP 424
+GG GP PG P P G P Q P DHCP P
Sbjct: 259 IGGQGP--PGDAGGPGPVGGQGPPGPQGPQGPPGDEGSCDHCPEP 301
>Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical
protein Y69H2.14 protein.
Length = 338
Score = 29.1 bits (62), Expect = 6.4
Identities = 28/90 (31%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Frame = +2
Query: 191 APGGARESRFGPSYMGLLGEM--PDMYSAGRPPSALGGA--GPLRP-GMQPCPMPRAGVK 355
APG + GP +G G P + P GG GP P G P G
Sbjct: 250 APGAPGQVVAGPGSVGPPGPQGPPGLAGPDGQPGHGGGGQPGPQGPPGDDGHPGEDGGAG 309
Query: 356 RPSDQCYDDRPSQSVPLDHCPMPDIADDGY 445
P D S DHCP P +A GY
Sbjct: 310 GPGQPGQDGGSGGSGACDHCPPPRVA-PGY 338
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 29.1 bits (62), Expect = 6.4
Identities = 28/98 (28%), Positives = 35/98 (35%), Gaps = 1/98 (1%)
Frame = +2
Query: 194 PGGARESRFGPSYMGLLGEMPDMYS-AGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQ 370
P G F PS G P ++ +G PPS G GP P P G PS+
Sbjct: 147 PSGGPPGPFDPSGAPPSGGPPGLFDPSGAPPSG-GPPGPFGPSGAPPSGGPPGPFNPSEA 205
Query: 371 CYDDRPSQSVPLDHCPMPDIADDGYASLQPKKSPPSNG 484
P+ P D P + P +PPS G
Sbjct: 206 PPSGGPTG--PFDPSGAPP-SGGPPGPFNPSGAPPSGG 240
Score = 29.1 bits (62), Expect = 6.4
Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 3/98 (3%)
Frame = +2
Query: 194 PGGARESRFGPSYMGLLGEMPDMYS-AGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQ 370
P G F PS G P + +G PPS G GP P P G PS
Sbjct: 462 PSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSG-GPPGPFNPSGAPPSGGPPGPFDPSGA 520
Query: 371 CYDDRPSQSVPLDHCPMPDIADDGYASL--QPKKSPPS 478
P +P D P+P + + + +PK S P+
Sbjct: 521 PPSGMPPVPLPTD-LPIPSESPSFFQWIFGRPKPSGPA 557
Score = 28.7 bits (61), Expect = 8.5
Identities = 26/97 (26%), Positives = 31/97 (31%)
Frame = +2
Query: 194 PGGARESRFGPSYMGLLGEMPDMYSAGRPPSALGGAGPLRPGMQPCPMPRAGVKRPSDQC 373
P G FGPS G P ++ P + G GP P P G PS
Sbjct: 177 PSGGPPGPFGPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDPSGAPPSGGPPGPFNPSGAP 236
Query: 374 YDDRPSQSVPLDHCPMPDIADDGYASLQPKKSPPSNG 484
P P D P + P +PPS G
Sbjct: 237 PSGGPPG--PFDPSGAPP-SGGPPGPFNPSGAPPSGG 270
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 28.7 bits (61), Expect = 8.5
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 305 PLRPGMQPCPMPRAGVKRPSDQCYDDRPS 391
P P PCP P + RPS C RPS
Sbjct: 73 PPPPPPMPCPPPPPPMPRPSCPCMMQRPS 101
>AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen protein
45 protein.
Length = 327
Score = 28.7 bits (61), Expect = 8.5
Identities = 23/70 (32%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Frame = +2
Query: 224 PSYMGLLGEMPDMYSAGRP-PSALGGAGPLR--PGMQPCPMPRAGVKRPSDQCYDDRPSQ 394
P G GEM G P P GAG + PG Q P P +P D +
Sbjct: 252 PGPPGRQGEMGPQGPPGPPGPRGKDGAGGEKGAPGDQGNPGPYGKPGQPGAPGPDGSAGE 311
Query: 395 SVPLDHCPMP 424
DHCP P
Sbjct: 312 KGGCDHCPPP 321
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,765,437
Number of Sequences: 27780
Number of extensions: 473432
Number of successful extensions: 1605
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1584
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3245116438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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