Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_A11
         (1186 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    33   0.005
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              27   0.43 
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           23   4.0  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   5.3  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 33.1 bits (72), Expect = 0.005
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 470 VTSWVAGRHNHHQRCPALGSGRGERFVMV 384
           VT+WV+G H++H+     G  RG+  VM+
Sbjct: 345 VTNWVSGNHDNHRVASRFGRQRGDEIVML 373


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.6 bits (56), Expect = 0.43
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 422  PDIADD-GYASLQPKKSPPSNGKKTKGRVKIKMEYIDNKLRRYTTFSKRK 568
            PD+ D+ GY +   +K PP  G       +IK   +   +R ++T+  R+
Sbjct: 1637 PDLRDELGYIAPPNRKLPPVPGSNYNTCDRIKRGTVIRSIRSHSTWDPRR 1686


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 485 KKTKGRVKIKMEYIDNKLRRYTTFSKRKT 571
           ++T+G +K+ +E +      YT  +KRKT
Sbjct: 53  EETRGVLKVFLENVIRDAVTYTEHTKRKT 81


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +2

Query: 473 PSNGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVML 628
           P N K+ K     +MEY+D   +         + +M+KA    T   T++ +
Sbjct: 339 PKNNKELKYDDIKEMEYLDKVFKETLRMYPPASILMRKAISDYTFNDTKITI 390


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 276,141
Number of Sequences: 438
Number of extensions: 5862
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40367835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)