Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_A10
         (1178 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    27   3.8  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    27   5.1  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    27   6.7  

>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 787 WSTHAMVSNHESVIVTSHPNIVGKFEKEFESLWIENDP 900
           +S H + S    V+VT+ P I+G F  +  + +I N P
Sbjct: 296 YSRHYLFSKILRVVVTNAPEIIGGFHLDVPNGYIFNKP 333


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 739 TKYKTVKGFVMSGSLNWSTHAMVSNHE 819
           T+Y  +KG+ +     W TH +   HE
Sbjct: 63  TRYACLKGYHVERRFGWDTHGLPVEHE 89


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 23/99 (23%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
 Frame = +1

Query: 382 ELNCFKLIKYIKSARETLDVCMYLITSNEIAEQIIRLGQKHILVRIVVDSDMAYTPPSQI 561
           EL C +L++  +S RET++    +  S+ +A   +RL  +++  + + ++++        
Sbjct: 647 ELRCLRLLEKQRSLRETIN--SVIPHSDSLAAGNLRLMFRNVKRQTMQEANLVLALAE-- 702

Query: 562 KKLKEYSFIQ---IQTSKKSILMHHKFCIIDGPKAIKRK 669
           K+  E++  Q   + T  +SI++H K  +    K  K K
Sbjct: 703 KQKTEHAMRQKEKLLTHLRSIMLHRKSIVTKVDKQNKAK 741


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,200,200
Number of Sequences: 5004
Number of extensions: 82738
Number of successful extensions: 197
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 633513876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)