Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_A10
         (1178 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.74 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   1.3  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              24   2.3  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              24   2.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   2.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   9.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   9.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   9.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.74
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 473 LSRLYDWDKNTFW*E*SLIATWLTPRRHKL 562
           L+ +Y+W +NTF       ATW    RH L
Sbjct: 527 LNEIYNWFQNTFCYFRRNAATWKNAVRHNL 556


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 325 IRHTIRVPPNKEITICESRELNC 393
           ++H IRVPP   I  C  R  NC
Sbjct: 459 LKHKIRVPPGTPIYECNKR-CNC 480


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 15/64 (23%), Positives = 28/64 (43%)
 Frame = +1

Query: 568 LKEYSFIQIQTSKKSILMHHKFCIIDGPKAIKRKNTLKTYAEKLNVYSQCNKSARQTTKY 747
           LK+++ +    + K  ++     I      IK+     +     N+Y + NK  +   KY
Sbjct: 67  LKQFNIVDESGNFKENIVQELTSIYLDENVIKKLVAECSVISDANIYIRFNKLVKCFGKY 126

Query: 748 KTVK 759
           KT+K
Sbjct: 127 KTMK 130


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 15/64 (23%), Positives = 28/64 (43%)
 Frame = +1

Query: 568 LKEYSFIQIQTSKKSILMHHKFCIIDGPKAIKRKNTLKTYAEKLNVYSQCNKSARQTTKY 747
           LK+++ +    + K  ++     I      IK+     +     N+Y + NK  +   KY
Sbjct: 67  LKQFNIVDESGNFKENIVQELTSIYLDENVIKKLVAECSVISDANIYIRFNKLVKCFGKY 126

Query: 748 KTVK 759
           KT+K
Sbjct: 127 KTMK 130


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
            protein.
          Length = 486

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 1038 HFFFVALLYTSTCCLLFVXIFH 973
            H  FV  +  ++ C LFV IFH
Sbjct: 275  HNVFVNNILAASACSLFVVIFH 296


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 321 CYSSYHQSTTKQRNNHM 371
           CY  YH ST +    H+
Sbjct: 388 CYYPYHPSTQEDSEEHL 404


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 321 CYSSYHQSTTKQRNNHM 371
           CY  YH ST +    H+
Sbjct: 388 CYYPYHPSTQEDSEEHL 404


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +2

Query: 641 LMGLRLLNAKTP*RPMLKS*MCILNAIKVQDKQRNI 748
           L+GL+L+NA+     +  S + + +A++  +K ++I
Sbjct: 276 LLGLKLINAENETAHIKDSLIVLTSALQEMNKSKSI 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 287,625
Number of Sequences: 438
Number of extensions: 5702
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40126833
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)