Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_A07
         (1194 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    29   1.3  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   2.9  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    27   3.9  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    26   9.0  

>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 800 MCKECLKTYATICNLRSHYIRVHAPKK-YKCIECXRKYGSXAYLNVHRR 943
           +C EC K +    +LR H   +H  +K + CI C +++     L  H R
Sbjct: 424 VCPECSKKFKRSEHLRRHIRSLHTSEKPFVCI-CGKRFSRRDNLRQHER 471


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
 Frame = +2

Query: 497 MIKMLNTVTNSVEATTENLYGSKTLYLSLNP-----EDFT--SNQFYDCRKIMNCKEASR 655
           M+K L+ V+ ++  T+  L  SK LY+S        ED T  S +F+  +K +  K   R
Sbjct: 1   MLKTLSKVSKNLSNTSAFLVKSKPLYISFCTCKAYFEDNTSLSRRFFSAKKSLQFKSLIR 60

Query: 656 RFLE 667
           ++ E
Sbjct: 61  KYSE 64


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +2

Query: 89  SLCSFLPQCMWALXXKLTIAMLF*VPXV*AVVXFFKMXSL 208
           SLCSFL Q M+ L   + I     +P V  +V F K+ SL
Sbjct: 297 SLCSFLSQVMYYLEVAIDIT----IPPVKIIVNFDKVDSL 332


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +2

Query: 803 CKECLKTYATICNLRSHYIRVHAPKKYKCIECXRKYGSXAYLNVH 937
           C  C K++A   + R H       K + C+ C +++     LN H
Sbjct: 602 CSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQRFARMDALNRH 646


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,884,289
Number of Sequences: 5004
Number of extensions: 76925
Number of successful extensions: 191
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 643474786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)