Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_A07
(1194 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812 36 0.048
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 36 0.083
01_01_0990 + 7847066-7847478,7847713-7848679 35 0.15
09_06_0235 - 21763470-21764511,21767865-21768261,21768625-217686... 34 0.19
01_05_0421 + 21990034-21990392,21991691-21992681 34 0.25
08_02_1602 - 28148255-28149413,28151927-28152087 33 0.59
01_06_1495 + 37769982-37771496 31 1.4
10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573 30 4.1
04_04_0240 + 23851859-23851917,23852018-23852087,23852177-238533... 30 4.1
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508... 30 4.1
01_05_0747 - 24857965-24858393,24858502-24860063,24860176-24860245 29 5.5
02_04_0316 - 21978330-21979397 29 9.5
>02_04_0007 - 18858587-18859529,18860434-18860830,18861674-18861812
Length = 492
Score = 36.3 bits (80), Expect = 0.048
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Frame = +2
Query: 728 HKRSPNFDIPLSKILFDENNPDILMCKE--CLKTYAT-----ICNLRSHYIRVHAPKKYK 886
H+R N L + E + +C E C AT + ++ HY R H KK+K
Sbjct: 84 HRRGHNLPWKLKQRSSTEAKKKVYVCPEITCPHHDATRALGDLTGIKKHYSRKHGEKKWK 143
Query: 887 CIECXRKYGSXAYLNVHRR 943
C C +KY + H +
Sbjct: 144 CDRCSKKYAVQSDWKAHTK 162
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 35.5 bits (78), Expect = 0.083
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Frame = +2
Query: 647 ASRRFL-EILNPTKPIKSEQKDIIIEKEHKRSPNFDIPLSKILFDENNPDILMCKE--CL 817
A+ RF+ EI N K Q+D ++ H+R N L + E + +C E C+
Sbjct: 44 ATNRFVCEICN-----KGFQRDQNLQL-HRRGHNLPWKLRQRSGKEVRKRVYVCPEPTCV 97
Query: 818 -----KTYATICNLRSHYIRVHAPKKYKCIECXRKYGSXAYLNVHRRDXHXXLVGPECG 979
+ + ++ H+ R H KK+KC +C +KY + H + +CG
Sbjct: 98 HHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGSREYRCDCG 156
>01_01_0990 + 7847066-7847478,7847713-7848679
Length = 459
Score = 34.7 bits (76), Expect = 0.15
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Frame = +2
Query: 728 HKRSPNFDIPLSKILFDENNPDILMC--KECL-----KTYATICNLRSHYIRVHAPKKYK 886
H+R N L + E + +C K C+ + + ++ H+ R H KK+K
Sbjct: 43 HRRGHNLPWKLRQRSGKEPRKRVYVCPEKSCVHHNPSRALGDLTGIKKHFCRKHGEKKWK 102
Query: 887 CIECXRKYGSXAYLNVHRRDXHXXLVGPECG 979
C +C ++Y + H + +CG
Sbjct: 103 CDKCSKRYAVQSDWKAHSKTCGTREYRCDCG 133
>09_06_0235 -
21763470-21764511,21767865-21768261,21768625-21768632,
21769489-21769565
Length = 507
Score = 34.3 bits (75), Expect = 0.19
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Frame = +2
Query: 728 HKRSPNFDIPLSKILFDENNPDILMCKE--CL-----KTYATICNLRSHYIRVHAPKKYK 886
H+R N L + E + +C E C+ + + ++ HY R H KK++
Sbjct: 66 HRRGHNLPWKLKQKNPKEARRRVYLCPEPSCVHHDPSRALGDLTGIKKHYCRKHGEKKWR 125
Query: 887 CIECXRKYGSXAYLNVHRRDXHXXLVGPECG 979
C +C ++Y + H + +CG
Sbjct: 126 CDKCSKRYAVQSDWKAHSKTCGTREYRCDCG 156
>01_05_0421 + 21990034-21990392,21991691-21992681
Length = 449
Score = 33.9 bits (74), Expect = 0.25
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 833 ICNLRSHYIRVHAPKKYKCIECXRKYGSXAYLNVHRR 943
+ ++ H+ R H KK+KC +C +KY + H +
Sbjct: 67 LTGIKKHFFRKHGEKKWKCDKCSKKYAVHSDWKAHSK 103
>08_02_1602 - 28148255-28149413,28151927-28152087
Length = 439
Score = 32.7 bits (71), Expect = 0.59
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 827 ATICNLRSHYIRVHAPKKYKCIECXRKYGS 916
+ IC ++HY R H PK Y C C RK+ S
Sbjct: 333 SVIC-AKNHYKRSHCPKMYVCNRCGRKHFS 361
>01_06_1495 + 37769982-37771496
Length = 504
Score = 31.5 bits (68), Expect = 1.4
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 830 TICNLRSHYIRVHAPKKYKCIEC-XRKYGSXAYLNVHRR 943
TI +++HY R H K Y C C +K+ A L H +
Sbjct: 334 TILCVKNHYKRSHCDKSYTCSRCNTKKFSVIADLKTHEK 372
>10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573
Length = 409
Score = 29.9 bits (64), Expect = 4.1
Identities = 10/49 (20%), Positives = 23/49 (46%)
Frame = +2
Query: 833 ICNLRSHYIRVHAPKKYKCIECXRKYGSXAYLNVHRRDXHXXLVGPECG 979
+ ++ H+ R H K+++C C ++Y + H ++ +CG
Sbjct: 108 LTGIKKHFSRKHGEKRWRCERCGKRYAVHSDWKAHVKNCGTREYRCDCG 156
>04_04_0240 +
23851859-23851917,23852018-23852087,23852177-23853394,
23853504-23854040
Length = 627
Score = 29.9 bits (64), Expect = 4.1
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +2
Query: 476 SRNNADLMIKMLNTVTNSVEATTENLYGSKTLYLSLNPEDFTSNQFYDCRKIMNCKEASR 655
+R D MI + V + ++LY + YL +PE S++ CR ++NC++ S
Sbjct: 415 ARTPLDKMIAVAEAVPDFARPEHDDLYRAIDTYLRAHPEMDKSSRKKLCR-VLNCRKLSE 473
Query: 656 R 658
+
Sbjct: 474 K 474
>03_02_0025 +
5084003-5084303,5084449-5084639,5084793-5084873,
5084972-5085319,5085409-5086293
Length = 601
Score = 29.9 bits (64), Expect = 4.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 193 KEXNDCSNXWDSEEHGDCQFXXQSPHALRKKRAERXKD 80
+E D S+ W +EE D + + PH L KK+ ++ KD
Sbjct: 216 EEDEDDSSNW-TEEITDALWGVRDPHFLNKKKKDKQKD 252
>01_05_0747 - 24857965-24858393,24858502-24860063,24860176-24860245
Length = 686
Score = 29.5 bits (63), Expect = 5.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 553 VRKQNPIFIFES*RFHQQPILRLQKNYE 636
V+ +P + RFH QPIL L KN E
Sbjct: 184 VQAHSPRLLLNQTRFHSQPILHLSKNDE 211
>02_04_0316 - 21978330-21979397
Length = 355
Score = 28.7 bits (61), Expect = 9.5
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 827 ATICNLRSHYIRVHAPKKYKCIEC--XRKYGSXAYLNVHRR 943
+ +C R+H+ R H PK Y C C +++ A L H R
Sbjct: 213 SAVC-ARNHFRRSHCPKLYACERCGGKKRFAVLADLRSHLR 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,120,049
Number of Sequences: 37544
Number of extensions: 410409
Number of successful extensions: 747
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3643211076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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