Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_A06
         (1167 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.12c |stp1|SPAC926.01c|low molecular weight phosphotyros...   135   1e-32
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    26   8.7  

>SPAC1071.12c |stp1|SPAC926.01c|low molecular weight phosphotyrosine
           protein phosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 156

 Score =  135 bits (327), Expect = 1e-32
 Identities = 67/149 (44%), Positives = 94/149 (63%), Gaps = 2/149 (1%)
 Frame = +3

Query: 192 FXCLGNLCRSPIAEAVFQQTVNAMXLGXHWX-IDSAAIGGWHVGNPPDWSALATLKXHNV 368
           F CLGN+CRSP+AEAVF+  V    L   +  IDS   G WHVGN PD   L  LK + +
Sbjct: 9   FVCLGNICRSPMAEAVFRNEVEKAGLEARFDTIDSCGTGAWHVGNRPDPRTLEVLKKNGI 68

Query: 369 PYNNHAXQITSEXFDYYDYIFGMDESNMKDLNKKAPKGSKAKLLLFGDF-DPQGDRIIRD 545
              + A ++++  F  +DYIF MD SN++++N+  P+GS+AK++LFG++  P   +I+ D
Sbjct: 69  HTKHLARKLSTSDFKNFDYIFAMDSSNLRNINRVKPQGSRAKVMLFGEYASPGVSKIVDD 128

Query: 546 PYYDSDSKGFEKCYEQSVRCSKGFLEHIA 632
           PYY   S GF  CY Q V  S+ FL+ IA
Sbjct: 129 PYY-GGSDGFGDCYIQLVDFSQNFLKSIA 156


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +3

Query: 393  ITSEXFDYYDYIFGMDESNMKDLNKKAPKGSKAKLLLFGDFDPQGDRII 539
            + S+  D + Y FG+    +K++ +    G  A+L L    DP  + ++
Sbjct: 1166 LQSQRLDEFMYGFGIISMKLKEMYQIITMGGNAELELVDSLDPFSEGVL 1214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,163,521
Number of Sequences: 5004
Number of extensions: 54135
Number of successful extensions: 127
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 625545148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)